RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 SMG5Q9UPR3 1016 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 TRPV2Q9Y5S1 764 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 PCNTO95613 3336 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 ZNF638Q14966 1978 aaKnown RBP9.4□□□□□ -0.91
TDP1-202ENST00000393452 MEIS3P2A8K0S8 358 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 M0QZ92 97 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 TYROBPO43914 113 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 DAB1O75553 588 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 BEST1O76090 585 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 ASMTLO95671 621 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 ZBED1O96006 694 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 KRT15P19012 456 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 IGFBP6P24592 240 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 STX2P32856 288 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 MRPS5P82675 430 aaKnown RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 ACTN3Q08043 901 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 ADIGQ0VDE8 80 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SLC10A2Q12908 348 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 CRHR2Q13324 411 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SPRED3Q2MJR0 410 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 NBPF20Q3BBV1 942 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 OTUD1Q5VV17 481 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 SERINC5Q86VE9 423 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 PALM2Q8IXS6 379 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CCDC185Q8N715 623 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 FBF1Q8TES7 1133 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 MZB1Q8WU39 189 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 WNT8BQ93098 351 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CSPG4P5Q96PW8 444 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 KCTD15Q96SI1 283 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 MAGEB5Q9BZ81 275 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SENP6Q9GZR1 1112 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 DHX35Q9H5Z1 703 aaKnown RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 PRDM16Q9HAZ2 1276 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 RAB6BQ9NRW1 208 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 RCOR3Q9P2K3 495 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 MYO18AQ92614 2054 aaKnown RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 CCT8L1PA6NM43 557 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 DNM1LO00429 736 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 GCATO75600 419 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SPAG6O75602 509 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CHRNA1P02708 482 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 GHRP10912 638 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 ATP2A2P16615 1042 aaKnown RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 ELK3P41970 407 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SLC8A3P57103 927 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 YWHAZP63104 245 aaKnown RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 GBE1Q04446 702 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 EFTUD2Q15029 972 aaKnown RBP eCLIP9.39□□□□□ -0.912e-8■■■■■ 57.6
TDP1-202ENST00000393452 SLC45A4Q5BKX6 768 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 KIAA0319Q5VV43 1072 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 NUGGCQ68CJ6 796 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 GDF6Q6KF10 455 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 CXCL17Q6UXB2 119 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 RGS9BPQ6ZS82 235 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CLEC20AQ6ZU45 233 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 RSPH3Q86UC2 560 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CDKL3Q8IVW4 592 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 DEFB106AQ8N104 65 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 TMEM86AQ8N2M4 240 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 AGGF1Q8N302 714 aaeCLIP9.39□□□□□ -0.91
TDP1-202ENST00000393452 MICALL1Q8N3F8 863 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 MCUQ8NE86 351 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 GDAP1Q8TB36 358 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 DCAKDQ8WVC6 231 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SENP8Q96LD8 212 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 SMC6Q96SB8 1091 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 NPY6RQ99463 290 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 PAFAH2Q99487 392 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 ACTR5Q9H9F9 607 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 KIF9Q9HAQ2 790 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 PNPLA8Q9NP80 782 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 FZD10Q9ULW2 581 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 CHMP2BQ9UQN3 213 aa9.39□□□□□ -0.91
TDP1-202ENST00000393452 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.39□□□□□ -0.91
TDP1-202ENST00000393452 A0A1W2PPM1 405 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 TCRBV9S1A1TA0A576 114 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 FAM155AB1AL88 458 aaPredicted RBP9.38□□□□□ -0.91
TDP1-202ENST00000393452 CLDN5O00501 218 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 C1QAP02745 245 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 TAC1P20366 129 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 ACAT1P24752 427 aaKnown RBP9.38□□□□□ -0.91
TDP1-202ENST00000393452 FOXN2P32314 431 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 NOS2P35228 1153 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 MLH1P40692 756 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 MAGEA3P43357 314 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 IL9RQ01113 521 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 MGAT3Q09327 533 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 NCBP2-AS2Q69YL0 99 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 TAX1BP1Q86VP1 789 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 OLFM3Q96PB7 478 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 QKIQ96PU8 341 aaKnown RBP eCLIP9.38□□□□□ -0.917e-10■■■■■ 43.3
TDP1-202ENST00000393452 SLC2A13Q96QE2 648 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 TGS1Q96RS0 853 aaKnown RBP9.38□□□□□ -0.91
TDP1-202ENST00000393452 GAD1Q99259 594 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 CYTH2Q99418 400 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 KLC2Q9H0B6 622 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 CRTAC1Q9NQ79 661 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 ETNK2Q9NVF9 386 aa9.38□□□□□ -0.91
TDP1-202ENST00000393452 DTLQ9NZJ0 730 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms