RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 KIAA0319LQ8IZA0 1049 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 TAGAPQ8N103 731 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 NKD2Q969F2 451 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 GDAP1L1Q96MZ0 367 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 VPS11Q9H270 941 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 CICQ96RK0 1608 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 ACKR2O00590 384 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 ATP2C1P98194 919 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 DDR2Q16832 855 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 WSCD1Q658N2 575 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 ZCCHC8Q6NZY4 707 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 PLPPR4Q7Z2D5 763 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 PYROXD1Q8WU10 500 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 MED8Q96G25 268 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC2A4RGQ9NR83 387 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 METTL5Q9NRN9 209 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 TRMT6Q9UJA5 497 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 USH1CQ9Y6N9 552 aa9.52□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP26A1O43174 497 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 AP5Z1O43299 807 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SUPT3HO75486 399 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CRTAMO95727 393 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 PCCBP05166 539 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 TUBBP07437 444 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 GPC5P78333 572 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CARTPTQ16568 116 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ADCK5Q3MIX3 580 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 DDIASQ8IXT1 998 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 C10orf67Q8IYJ2 551 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ARHGAP24Q8N264 748 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CELF5Q8N6W0 485 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 Q8N9G6 341 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 NT5MQ9NPB1 228 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 UBA2Q9UBT2 640 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 HGSO14964 777 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 AXIN1O15169 862 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 RPL17P18621 184 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ANXA11P50995 505 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 RHBDL3P58872 404 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ZC2HC1CQ53FD0 456 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 C4orf19Q8IY42 314 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CACNA2D3Q8IZS8 1091 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 PROM2Q8N271 834 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 PTPRN2Q92932 1015 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 PAGE5Q96GU1 130 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 NDST4Q9H3R1 872 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 TMEM161AQ9NX61 479 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 RASSF10A6NK89 507 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ANXA9O76027 345 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CDH3P22223 829 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 BOP1Q14137 746 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ALG11Q2TAA5 492 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ITPRIPL2Q3MIP1 535 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 TSPAN17Q96FV3 270 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 LHX5Q9H2C1 402 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 RANBP17Q9H2T7 1088 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 THAP9Q9H5L6 903 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ABCC13Q9NSE7 274 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP8B1Q9UNU6 501 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 VWDEQ8N2E2 1590 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 TCRBV21S2A2A0A5A6 115 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 PP2D1A8MPX8 630 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 KCNN4O15554 427 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 MTSS1O43312 755 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SETSIPP0DME0 302 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 NPTX2P47972 431 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 P3H1Q32P28 736 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SGO1Q5FBB7 561 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 MFSD5Q6N075 450 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 LBX2Q6XYB7 198 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 METTL3Q86U44 580 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CCNYL1Q8N7R7 359 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CEP70Q8NHQ1 597 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CALML6Q8TD86 181 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 LMX1AQ8TE12 382 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CD101Q93033 1021 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 MCUR1Q96AQ8 359 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ELMO2Q96JJ3 720 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 POLR3CQ9BUI4 534 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 BRINP2Q9C0B6 783 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 BCL2L12Q9HB09 334 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 HPS4Q9NQG7 708 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 QRICH2Q9H0J4 1663 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 GOLGA8MH3BSY2 632 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 IGF2BP3O00425 579 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SRP72O76094 671 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 MT-ND3P03897 115 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SERPING1P05155 500 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 STX2P32856 288 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 SREBF1P36956 1147 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 BRCC3P46736 316 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 GEMP55040 296 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 ZNF200P98182 395 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 DRAP1Q14919 205 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 GJD3Q8N144 294 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 UHMK1Q8TAS1 419 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 LDAHQ9H6V9 325 aa9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 C8orf33Q9H7E9 229 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 CPSF2Q9P2I0 782 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-202ENST00000381753 TPX2Q9ULW0 747 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms