RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 COPS2P61201 443 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 CREMQ03060 361 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 ADCY2Q08462 1091 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 NME3Q13232 169 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 KLF1Q13351 362 aaPredicted RBP19.39■□□□□ 0.7
CLN3-206ENST00000360019 BOLA3Q53S33 107 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 ZC3H12AQ5D1E8 599 aaKnown RBP19.39■□□□□ 0.7
CLN3-206ENST00000360019 MON1AQ86VX9 555 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 CCDC185Q8N715 623 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 DQX1Q8TE96 717 aaKnown RBP19.39■□□□□ 0.7
CLN3-206ENST00000360019 TEKT4Q8WW24 435 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 PGAP3Q96FM1 320 aaPredicted RBP19.39■□□□□ 0.7
CLN3-206ENST00000360019 TCF25Q9BQ70 676 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 TRIM62Q9BVG3 475 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.39■□□□□ 0.7
CLN3-206ENST00000360019 RRN3Q9NYV6 651 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 COX16Q9P0S2 106 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 MTUS1Q9ULD2 1270 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 YIPF1Q9Y548 306 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 ZNF638Q14966 1978 aaKnown RBP19.39■□□□□ 0.69
CLN3-206ENST00000360019 hCG_1818297A0A087WSY0 165 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.39■□□□□ 0.69
CLN3-206ENST00000360019 MDM4O15151 490 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 CXCL14O95715 111 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 KRT10P13645 584 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 DEUP1Q05D60 604 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 TAZQ16635 292 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 CA9Q16790 459 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 ODF2Q5BJF6 829 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 BTBD8Q5XKL5 378 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 TAC4Q86UU9 113 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 PRELID2Q8N945 189 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 SPPL3Q8TCT6 385 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 POF1BQ8WVV4 589 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 FBXO32Q969P5 355 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 CEP295NLQ96MC4 621 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 KRT12Q99456 494 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 WDR6Q9NNW5 1121 aaKnown RBP19.39■□□□□ 0.69
CLN3-206ENST00000360019 COMMD8Q9NX08 183 aa19.39■□□□□ 0.69
CLN3-206ENST00000360019 GBF1Q92538 1859 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 CCDC188H7C350 402 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 CSPG5O95196 566 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 PTPN7P35236 360 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 TAF10Q12962 218 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 PPP2R5EQ16537 467 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 TFDP3Q5H9I0 405 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 ERMARDQ5T6L9 678 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 KLHL7Q8IXQ5 586 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 KCTD6Q8NC69 237 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 TTLL2Q9BWV7 592 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 FAM204AQ9H8W3 233 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 DDIT4Q9NX09 232 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 IRAK3Q9Y616 596 aa19.38■□□□□ 0.69
CLN3-206ENST00000360019 IGLV3-25P01717 112 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 RHOXF2BP0C7M4 288 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 CDH6P55285 790 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 TUBB4BP68371 445 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 MRPS25P82663 173 aaKnown RBP19.37■□□□□ 0.69
CLN3-206ENST00000360019 KAZNQ674X7 775 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 TCEAL8Q8IYN2 117 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 RHOXF2Q9BQY4 288 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 MAGEB5Q9BZ81 275 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 DDX47Q9H0S4 455 aaKnown RBP19.37■□□□□ 0.69
CLN3-206ENST00000360019 ANKZF1Q9H8Y5 726 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 NUDT5Q9UKK9 219 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 TRANK1O15050 2925 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 HIDE1A8MVS5 230 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 TGM5O43548 720 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 CETN2P41208 172 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 EIF4EBP2Q13542 120 aaPredicted RBP19.37■□□□□ 0.69
CLN3-206ENST00000360019 ARHGAP18Q8N392 663 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 CASP10Q92851 521 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 KLHL5Q96PQ7 755 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 LRRC1Q9BTT6 524 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 ANLNQ9NQW6 1124 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 ENTPD7Q9NQZ7 604 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 TMPRSS4Q9NRS4 437 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 FZD10Q9ULW2 581 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 MAGED2Q9UNF1 606 aaPredicted RBP19.37■□□□□ 0.69
CLN3-206ENST00000360019 AP4E1Q9UPM8 1137 aa19.37■□□□□ 0.69
CLN3-206ENST00000360019 YBX2Q9Y2T7 364 aaKnown RBP19.37■□□□□ 0.69
CLN3-206ENST00000360019 TNRC18O15417 2968 aaPredicted RBP19.36■□□□□ 0.69
CLN3-206ENST00000360019 GOLGA6L10A0A0M3HER8 536 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 PRRG1O14668 218 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 ELF1P32519 619 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 CAMK1Q14012 370 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 DPYSL3Q14195 570 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 DPYSL2Q16555 572 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 PLPP4Q5VZY2 271 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 FAM71BQ8TC56 605 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 GDF15Q99988 308 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 CALN1Q9BXU9 219 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 SMOC2Q9H3U7 446 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 PCDH18Q9HCL0 1135 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 TLR9Q9NR96 1032 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 MTMR10Q9NXD2 777 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLN3-206ENST00000360019 INSL5Q9Y5Q6 135 aa19.36■□□□□ 0.69
CLN3-206ENST00000360019 C2orf71A6NGG8 1288 aa19.35■□□□□ 0.69
CLN3-206ENST00000360019 I6L893 689 aaPredicted RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms