RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ELL3Q9HB65 397 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ATP5BP06576 529 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 TPBGLP0DKB5 382 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MYL9P24844 172 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ETFBP38117 255 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CYB5D1Q6P9G0 228 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MCCC1Q96RQ3 725 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 GPN1Q9HCN4 374 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CRYL1Q9Y2S2 319 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 FLT1P17948 1338 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MUTP22033 750 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 USP11P51784 963 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CHN2P52757 468 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 PRKAA2P54646 552 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEB10Q96LZ2 347 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 NSMCE2Q96MF7 247 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 AIFM2Q9BRQ8 373 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ATP1A3P13637 1013 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 FGD3Q5JSP0 725 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MIIPQ5JXC2 388 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 LRRC6Q86X45 466 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEE2Q8TD90 523 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ACTRT2Q8TDY3 377 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ITCHQ96J02 903 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 GREM2Q9H772 168 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 AREL1O15033 823 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 GPD1P21695 349 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MTTPP55157 894 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 VPS35Q96QK1 796 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 IQCMA0A1B0GVH7 501 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 LIN7AO14910 233 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MDM4O15151 490 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 PLA2G6O60733 806 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ALDH9A1P49189 494 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 NCOA4Q13772 614 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CYP20A1Q6UW02 462 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 COL23A1Q86Y22 540 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 MED8Q96G25 268 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CCDC115Q96NT0 180 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC38A2Q96QD8 506 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CYLDQ9NQC7 956 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ADHFE1Q8IWW8 467 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 RAET1EQ8TD07 263 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 AHCYL2Q96HN2 611 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 EIF2AK1Q9BQI3 630 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC35C2Q9NQQ7 365 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 O00370 1275 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 CYP26A1O43174 497 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 STIP1P31948 543 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 RCAN1P53805 252 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 DLG1Q12959 904 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 OLFML1Q6UWY5 402 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 RPRD1AQ96P16 312 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 BBS4Q96RK4 519 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 MMADHCQ9H3L0 296 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 PRDM8Q9NQV8 689 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 HEY2Q9UBP5 337 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF518AQ6AHZ1 1483 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 A0A087WXM4 84 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 FAM25EA8MYX2 175 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 HMBSP08397 361 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 PTPN3P26045 913 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 C4orf46Q504U0 113 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 C10orf120Q5SQS8 335 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 KYQ8NBH2 561 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 LRRC1Q9BTT6 524 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 CLN6Q9NWW5 311 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 RGS14O43566 566 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 TCEA3O75764 348 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 GARTP22102 1010 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 SSTR3P32745 418 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 TCEA2Q15560 299 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 OR6J1Q8NGC5 347 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 WDCPQ9H6R7 721 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 PDGFCQ9NRA1 345 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 GPRC5DQ9NZD1 345 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 STAP2Q9UGK3 403 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 MCM8Q9UJA3 840 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 POTEMA6NI47 508 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 STAU1O95793 577 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 CHRNGP07510 517 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 FAM200BP0CF97 657 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 CLUP10909 449 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 C5orf22Q49AR2 442 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 BLOC1S5Q8TDH9 187 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 EFHD2Q96C19 240 aaPredicted RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 ENTPD4Q9Y227 616 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 A0A1W2PQ72 361 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 PYDC2Q56P42 97 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 TMEM106CQ9BVX2 250 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 ADGRG1Q9Y653 693 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 PDXKO00764 312 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC25A12O75746 678 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 S100A2P29034 98 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 CCNG2Q16589 344 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 MGAT5BQ3V5L5 792 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEC3Q8TD91 643 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 GSDMCQ9BYG8 508 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms