RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CCDC89Q8N998 374 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 ATP6V1G3Q96LB4 118 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 RAD9AQ99638 391 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 RAB6CQ9H0N0 254 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 AAASQ9NRG9 546 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 SPG21Q9NZD8 308 aa23.59■■□□□ 1.37
CDX1-201ENST00000231656 AP1G2O75843 785 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 NUDT17P0C025 328 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 RARGP13631 454 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 ADCY8P40145 1251 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 LMAN1P49257 510 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 CAV1Q03135 178 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 SLMAPQ14BN4 828 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 SLC39A12Q504Y0 691 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 ZNF771Q7L3S4 317 aaPredicted RBP23.58■■□□□ 1.37
CDX1-201ENST00000231656 SH2D3CQ8N5H7 860 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 ALLCQ8N6M5 410 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 SLC35B2Q8TB61 432 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 SMARCD1Q96GM5 515 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 RHOBTB2Q9BYZ6 727 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 TMEM30AQ9NV96 361 aa23.58■■□□□ 1.37
CDX1-201ENST00000231656 OR6C75A6NL08 312 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 TBC1D4O60343 1298 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 CAPN15O75808 1086 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 ENDOD1O94919 500 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 LINC00271P0C7V0 271 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 MYZAPP0CAP1 466 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 SCNN1AP37088 669 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 ITGA8P53708 1063 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 CACNA2D1P54289 1103 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 MAP3K7CLP57077 242 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 KCTD16Q68DU8 428 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 PIGZQ86VD9 579 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 DCP1BQ8IZD4 617 aaKnown RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 KCTD6Q8NC69 237 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 HSPH1Q92598 858 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 HAUS1Q96CS2 278 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 CFAP57Q96MR6 1250 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 SMOQ99835 787 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 NR2E3Q9Y5X4 410 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 HMGB1P1B2RPK0 211 aaPredicted RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 H7C4K7 107 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 TLL1O43897 1013 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 BDNFP23560 247 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 ARSEP51690 589 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 EIF3BP55884 814 aaKnown RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 C4orf50Q6ZRC1 276 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 SPATA2LQ8IUW3 424 aaPredicted RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 SP7Q8TDD2 431 aaPredicted RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 CLP1Q92989 425 aaKnown RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 HSFY1Q96LI6 401 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 FRMD8P1Q9BZ68 369 aaPredicted RBP23.57■■□□□ 1.36
CDX1-201ENST00000231656 SEMA4AQ9H3S1 761 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 ZNF148Q9UQR1 794 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 PCDHB12Q9Y5F1 795 aa23.57■■□□□ 1.36
CDX1-201ENST00000231656 GOLGA6L10A6NI86 522 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 CST8O60676 142 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 SOD2P04179 222 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 ITGAVP06756 1048 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 PPM1AP35813 382 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 VPS41P49754 854 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 PRSS55Q6UWB4 352 aaPredicted RBP23.56■■□□□ 1.36
CDX1-201ENST00000231656 RSPO2Q6UXX9 243 aaPredicted RBP23.56■■□□□ 1.36
CDX1-201ENST00000231656 SLC26A9Q7LBE3 791 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 GSTA5Q7RTV2 222 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 PRUNE1Q86TP1 453 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 BBOF1Q8ND07 529 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 KCNK16Q96T55 309 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 CSNK1G1Q9HCP0 422 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 ANAPC5Q9UJX4 755 aa23.56■■□□□ 1.36
CDX1-201ENST00000231656 SDC4P31431 198 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 MAGEA10P43363 369 aaPredicted RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 ACADSBP45954 432 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 CDO1Q16878 200 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 C9orf50Q5SZB4 431 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 UBAP2Q5T6F2 1119 aaKnown RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 DENND2CQ68D51 928 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 ARCQ7LC44 396 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 DDX53Q86TM3 631 aaKnown RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 GLIS1Q8NBF1 620 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 ZMIZ2Q8NF64 920 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 CCHCR1Q8TD31 782 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 CLEC4CQ8WTT0 213 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 OXCT2Q9BYC2 517 aaPredicted RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 LRRC4CQ9HCJ2 640 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 LCHNA4D1U4 455 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 PRPSAP2O60256 369 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 SHBGP04278 402 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 CHKAP35790 457 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 DYNLT1P63172 113 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 ATP11AP98196 1134 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 OTUD4Q01804 1114 aaKnown RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 NFE2Q16621 373 aaPredicted RBP23.55■■□□□ 1.36
CDX1-201ENST00000231656 EMC10Q5UCC4 262 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 IZUMO3Q5VZ72 239 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 KIAA1841Q6NSI8 718 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 TTC13Q8NBP0 860 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 ACTL9Q8TC94 416 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 FAM172AQ8WUF8 416 aa23.55■■□□□ 1.36
CDX1-201ENST00000231656 KCTD13Q8WZ19 329 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms