RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 VWA5AO00534 786 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 DNALI1O14645 258 aaPredicted RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 PDGFRAP16234 1089 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 GARSP41250 739 aaKnown RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 NLRP11P59045 1033 aaKnown RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 ANKDD1AQ495B1 522 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 KATNAL2Q8IYT4 538 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 CCNYQ8ND76 341 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 RNF34Q969K3 372 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 KLF6Q99612 283 aaPredicted RBP10.8□□□□□ -0.68
LIG1-220ENST00000601091 TSSK1BQ9BXA7 367 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 NUF2Q9BZD4 464 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 PIF1Q9H611 641 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 PTPRHQ9HD43 1115 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 CTNNAL1Q9UBT7 734 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 VTI1BQ9UEU0 232 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 RIMKLBQ9ULI2 386 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 ANGPTL3Q9Y5C1 460 aa10.8□□□□□ -0.68
LIG1-220ENST00000601091 LRP5O75197 1615 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 WNT10BO00744 389 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CAPN9O14815 690 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 OGTO15294 1046 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 LSM8O95777 96 aaKnown RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 PAEPP09466 180 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 LINGO3P0C6S8 592 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CCDC166P0CW27 439 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 PTGIRP43119 386 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 ELF3P78545 371 aaPredicted RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 ZNF200P98182 395 aaPredicted RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 CXCL9Q07325 125 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 MFSD7Q6UXD7 560 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 RFX8Q6ZV50 586 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 APOBEC3FQ8IUX4 373 aaKnown RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 DAW1Q8N136 415 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 SLAIN1Q8ND83 568 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 AGAP11Q8TF27 550 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 DEPDC1BQ8WUY9 529 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 MFSD14AQ96MC6 490 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 TMEM109Q9BVC6 243 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 RSAD1Q9HA92 442 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CCDC177Q9NQR7 707 aaPredicted RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 RAB6BQ9NRW1 208 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 WRAP73Q9P2S5 460 aaPredicted RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 SLC24A2Q9UI40 661 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 ANKRD36CQ5JPF3 1778 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 PCYT1AP49585 367 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 IRX4P78413 519 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 UGCGQ16739 394 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 MAJINQ3KP22 176 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 LONP2Q86WA8 852 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 TOR1AIP2Q8NFQ8 470 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 SLC13A1Q9BZW2 595 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CISHQ9NSE2 258 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 ZDHHC18Q9NUE0 388 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CLIC5Q9NZA1 410 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 DNPEPQ9ULA0 475 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 SYNJ2BP-COX16A0A087WUM0 186 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 H0YGN5 161 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CCDC22O60826 627 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 CREB1P16220 341 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 VCPP55072 806 aaKnown RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 CD83Q01151 205 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 DCAF12L1Q5VU92 463 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 SDE2Q6IQ49 451 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 MFSD5Q6N075 450 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 ANO5Q75V66 913 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 NUDCD3Q8IVD9 361 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 ZCCHC9Q8N567 271 aaKnown RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 STON2Q8WXE9 905 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 DCPSQ96C86 337 aaKnown RBP10.79□□□□□ -0.68
LIG1-220ENST00000601091 GRHL1Q9NZI5 618 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 COX16Q9P0S2 106 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 PNMA3Q9UL41 463 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 SHOC2Q9UQ13 582 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 NFS1Q9Y697 457 aa10.79□□□□□ -0.68
LIG1-220ENST00000601091 EDIL3O43854 480 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 ZNF16P17020 682 aaPredicted RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 MYL6P60660 151 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 OTUD4Q01804 1114 aaKnown RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 MAMLD1Q13495 774 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 ZACNQ401N2 412 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 KCNT1Q5JUK3 1230 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 FAM71DQ8N9W8 422 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 OR6B3Q8NGW1 331 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 ACTL9Q8TC94 416 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 BRSK1Q8TDC3 778 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 PRPF31Q8WWY3 499 aaKnown RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 ZBTB45Q96K62 511 aaPredicted RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 FRMD8P1Q9BZ68 369 aaPredicted RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 PRKAG2Q9UGJ0 569 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 NOCTQ9UK39 431 aaKnown RBP10.78□□□□□ -0.68
LIG1-220ENST00000601091 SPAG6O75602 509 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 APRTP07741 180 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 PEX5P50542 639 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 FAM47CQ5HY64 1035 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 PRAMEF18Q5VWM3 479 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 NXNQ6DKJ4 435 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 SAMD7Q7Z3H4 446 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 SPATA33Q96N06 139 aa10.78□□□□□ -0.68
LIG1-220ENST00000601091 P2RX7Q99572 595 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms