RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 RAB6CQ53S08 254 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 OTUD1Q5VV17 481 aaPredicted RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 IRF2BP2Q7Z5L9 587 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 TMEM110Q86TL2 294 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 SFTPA1Q8IWL2 248 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 SCUBE3Q8IX30 993 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 UBALD2Q8IYN6 164 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 SIX5Q8N196 739 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 CELF5Q8N6W0 485 aaKnown RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 TMEM105Q8N8V8 129 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 BPIFB1Q8TDL5 484 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 OVCA2Q8WZ82 227 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 EDEM1Q92611 657 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 NXPE3Q969Y0 559 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 DDX23Q9BUQ8 820 aaKnown RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 TRMT61BQ9BVS5 477 aaKnown RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 MIS12Q9H081 205 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 NAT10Q9H0A0 1025 aaKnown RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 RAB6CQ9H0N0 254 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 TSPY26PQ9H489 355 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 OBP2AQ9NY56 170 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 IFNKQ9P0W0 207 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 KIAA1549LQ6ZVL6 1849 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 SOBPA7XYQ1 873 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 CHADO15335 359 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 TLR5O60602 858 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 GJB6O95452 261 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 ZBED1O96006 694 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 MBL2P11226 248 aaPredicted RBP9.68□□□□□ -0.86
VPS35-206ENST00000565228 CHRM1P11229 460 aaPredicted RBP9.68□□□□□ -0.86
VPS35-206ENST00000565228 TFE3P19532 575 aaPredicted RBP9.68□□□□□ -0.86
VPS35-206ENST00000565228 AVPR1AP37288 418 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 TUBP50607 506 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 STARD6P59095 220 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 YWHAGP61981 247 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS35-206ENST00000565228 PTP4A2Q12974 167 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 MTF1Q14872 753 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 FKBP15Q5T1M5 1219 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 HECTD3Q5T447 861 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 ARTNQ5T4W7 220 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 SYPL2Q5VXT5 272 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 BSPRYQ5W0U4 402 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 OLFML1Q6UWY5 402 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 C12orf40Q86WS4 652 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 SCML4Q8N228 414 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 DEPDC1BQ8WUY9 529 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 MYEOVQ96EZ4 313 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 SLITRK1Q96PX8 696 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 GCNAQ96QF7 691 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 XPO4Q9C0E2 1151 aaKnown RBP9.68□□□□□ -0.86
VPS35-206ENST00000565228 LHX5Q9H2C1 402 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 FBXO44Q9H4M3 255 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 EBF3Q9H4W6 596 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 C2orf42Q9NWW7 574 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 DLGAP2Q9P1A6 1054 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 CFAP97Q9P2B7 532 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 WNT16Q9UBV4 365 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 SFMBT1Q9UHJ3 866 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 NAGPAQ9UK23 515 aa9.68□□□□□ -0.86
VPS35-206ENST00000565228 MYO18AQ92614 2054 aaKnown RBP9.68□□□□□ -0.86
VPS35-206ENST00000565228 VPS13AQ96RL7 3174 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 A0A1W2PQC6 194 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 LRRC53A6NM62 1247 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 I6L893 689 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 TRIM24O15164 1050 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 MSI1O43347 362 aaKnown RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 STC2O76061 302 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 CYP1A1P04798 512 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 CKMP06732 381 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 IRF1P10914 325 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 UNGP13051 313 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 TARSP26639 723 aaKnown RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 PPP3CCP48454 512 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 NOMO3P69849 1222 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 EFEMP1Q12805 493 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 EIF4EBP2Q13542 120 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 GAS6Q14393 721 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 MLF2Q15773 248 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 Q6ZNB5 142 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 FAM183BPQ6ZVS7 135 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 BMP8AQ7Z5Y6 402 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 PHLDB2Q86SQ0 1253 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 BBS7Q8IWZ6 715 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 ZNF276Q8N554 614 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 TTC16Q8NEE8 873 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 PDZD8Q8NEN9 1154 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 NEK11Q8NG66 645 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 CPA5Q8WXQ8 436 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 HSFY1Q96LI6 401 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 BRD9Q9H8M2 597 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 TBC1D17Q9HA65 648 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 LRRC4Q9HBW1 653 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 ANLNQ9NQW6 1124 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 CNGB3Q9NQW8 809 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 ARHGEF3Q9NR81 526 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 TLR8Q9NR97 1041 aaKnown RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 POLR3BQ9NW08 1133 aaPredicted RBP9.67□□□□□ -0.86
VPS35-206ENST00000565228 TAS2R14Q9NYV8 317 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 CLIC5Q9NZA1 410 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 HESX1Q9UBX0 185 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms