RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ALKAL1Q6UXT8 129 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 SCUBE3Q8IX30 993 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 LRRC43Q8N309 656 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ACSF2Q96CM8 615 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 LRRC45Q96CN5 670 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 DDX27Q96GQ7 796 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 KCNK16Q96T55 309 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TRIM7Q9C029 511 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 KLHL11Q9NVR0 708 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ADAM28Q9UKQ2 775 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 PCDHGC5Q9Y5F6 944 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 WDR91A4D1P6 747 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 PIRO00625 290 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 SCAMP3O14828 347 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TTI1O43156 1089 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 MAP3K13O43283 966 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TRAPPC3O43617 180 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 SPOPO43791 374 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 RRM1P23921 792 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 RPS6KA1Q15418 735 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TSNAXIP1Q2TAA8 658 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 FUT10Q6P4F1 479 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 KCNT2Q6UVM3 1135 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 C16orf59Q7L2K0 433 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 FIBCD1Q8N539 461 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TMEM35BQ8NCS4 154 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 RSPH1Q8WYR4 309 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 IQCDQ96DY2 449 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 CASD1Q96PB1 797 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 APOL5Q9BWW9 433 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 EDEM3Q9BZQ6 932 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF518BQ9C0D4 1074 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 SUDS3Q9H7L9 328 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 LRRC4Q9HBW1 653 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 CDY1Q9Y6F8 540 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ABHD14A-ACY1A0A1B0GW23 586 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 HOXA2O43364 376 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 CILPO75339 1184 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 GALTP07902 379 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TARSP26639 723 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 MAGEA10P43363 369 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 CLDN10P78369 228 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 IFI35P80217 286 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ZBTB6Q15916 424 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 DDR2Q16832 855 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 HP1BP3Q5SSJ5 553 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM102AQ5T9C2 384 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 MRPL10Q7Z7H8 261 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 NT5DC4Q86YG4 428 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 SPATA2LQ8IUW3 424 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 LRRC52Q8N7C0 313 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 B3GALNT2Q8NCR0 500 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 HIPK4Q8NE63 616 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ST13P5Q8NFI4 369 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 CEP70Q8NHQ1 597 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 GIPC2Q8TF65 315 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 TNIP3Q96KP6 325 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF558Q96NG5 402 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 NSRP1Q9H0G5 558 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 LMCD1Q9NZU5 365 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ANAPC7Q9UJX3 599 aa9.05□□□□□ -0.96
LIMCH1-209ENST00000509277 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 A6NNZ2 444 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MED7O43513 233 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CREB3O43889 395 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CHRNB2P17787 502 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PTPN1P18031 435 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 RFX1P22670 979 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CYP2F1P24903 491 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 GBP1P32455 592 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 OR1D2P34982 312 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SHHQ15465 462 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MEA1Q16626 185 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TUBB8Q3ZCM7 444 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ZC3H12AQ5D1E8 599 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF697Q5TEC3 545 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PLPP4Q5VZY2 271 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 DPY19L2P1Q6NXN4 242 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 DCLRE1AQ6PJP8 1040 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CPNE8Q86YQ8 564 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CCNJLQ8IV13 435 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 VPS52Q8N1B4 723 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 XPO6Q96QU8 1125 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ZSWIM1Q9BR11 485 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 NUP85Q9BW27 656 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MTIF3Q9H2K0 278 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 LRRC4CQ9HCJ2 640 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ENTPD7Q9NQZ7 604 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 KIAA0355O15063 1070 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF189O75820 626 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PDCD2Q16342 344 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 VARS2Q5ST30 1063 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 LIN9Q5TKA1 542 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PAPD7Q5XG87 772 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 DENND2CQ68D51 928 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 DNAJC24Q6P3W2 148 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 HOOK3Q86VS8 718 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 COLGALT2Q8IYK4 626 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 UCMAQ8WVF2 138 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms