RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OR6J1Q8NGC5 347 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 OSBPL11Q9BXB4 747 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 TDRKHQ9Y2W6 561 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 ZBTB39O15060 712 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 PLSCR1O15162 318 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 UBE2SQ16763 222 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 RNF219Q5W0B1 726 aaPredicted RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 GUF1Q8N442 669 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 AGR3Q8TD06 166 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 IRF2BPLQ9H1B7 796 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 CHMP1AQ9HD42 196 aaPredicted RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 SLC24A2Q9UI40 661 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 PCDHGA10Q9Y5H3 936 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 CES2O00748 559 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 DGKIO75912 1065 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 CSF1RP07333 972 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 WEE2P0C1S8 567 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 RARBP10826 455 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 GSSP48637 474 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 ITGA1P56199 1179 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 COPZ1P61923 177 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 PSMC5P62195 406 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 SLC9A5Q14940 896 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 ZNF667Q5HYK9 610 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 HABP4Q5JVS0 413 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 ZNF544Q6NX49 715 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 TTC30BQ8N4P2 665 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 TDRD5Q8NAT2 981 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 ENGASEQ8NFI3 743 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 SPATA33Q96N06 139 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 GPAMQ9HCL2 828 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 CSPG5O95196 566 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 GP5P40197 560 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 TPTEP56180 551 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 FOXO4P98177 505 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 VEPH1Q14D04 833 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 RNF180Q86T96 592 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 LRRC17Q8N6Y2 441 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 OR6B3Q8NGW1 331 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 SENP7Q9BQF6 1050 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 MKNK1Q9BUB5 465 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 DAGLAQ9Y4D2 1042 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 NEURL4Q96JN8 1562 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 SOX5P35711 763 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 CSE1LP55060 971 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 POLD3Q15054 466 aaPredicted RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 SLC9A4Q6AI14 798 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 TWF2Q6IBS0 349 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 PRR23CQ6ZRP0 262 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 BBS7Q8IWZ6 715 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 C1orf131Q8NDD1 294 aaKnown RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 PCMTD2Q9NV79 361 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 DEPDC5O75140 1603 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ZBTB11O95625 1053 aaPredicted RBP13.69□□□□□ -0.22
USP40-208ENST00000450966 TIMM50Q3ZCQ8 353 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ZNF394Q53GI3 561 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 SETD9Q8NE22 299 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 APBB2Q92870 758 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 HPS3Q969F9 1004 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 FAM111AQ96PZ2 611 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 RNF38Q9H0F5 515 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 USE1Q9NZ43 259 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 TPST1O60507 370 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 RIPPLY1Q0D2K3 151 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 PRMT9Q6P2P2 845 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 SLC35G2Q8TBE7 412 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ZNF232Q9UNY5 417 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 H7C0S8 307 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ATF6P18850 670 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 QARSP47897 775 aaKnown RBP13.69□□□□□ -0.22
USP40-208ENST00000450966 EIF2B5Q13144 721 aaKnown RBP13.69□□□□□ -0.22
USP40-208ENST00000450966 STK32CQ86UX6 486 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 IFNEQ86WN2 208 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 PIK3C3Q8NEB9 887 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 APPL2Q8NEU8 664 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 PYDC1Q8WXC3 89 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ZNF560Q96MR9 790 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 PPP1R16BQ96T49 567 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 POLR1BQ9H9Y6 1135 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 DNAJC11Q9NVH1 559 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 IP6K2Q9UHH9 426 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 FOXN3O00409 490 aaPredicted RBP13.69□□□□□ -0.22
USP40-208ENST00000450966 TEX28O15482 410 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ZC3H11AO75152 810 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP40-208ENST00000450966 EPHX2P34913 555 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 CAMK1DQ8IU85 385 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 ARHGEF3Q9NR81 526 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 GNPTGQ9UJJ9 305 aa13.69□□□□□ -0.22
USP40-208ENST00000450966 SLIT1O75093 1534 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 PIPSLA2A3N6 862 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ASLP04424 464 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 HOXA13P31271 388 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 CPT1AP50416 773 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 CACNB3P54284 484 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 HMGCS2P54868 508 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 RTP1P59025 263 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 CHRNB3Q05901 458 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 KCNT1Q5JUK3 1230 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 TBCELQ5QJ74 424 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 GPR107Q5VW38 600 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms