RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeastyeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKN1YGR143W RPL29P05747 59 aaPredicted RBP3.9□□□□□ -1.79
SKN1YGR143W YHR212W-AP0CX91 67 aa3.89□□□□□ -1.79
SKN1YGR143W YHR032W-AP0C5N6 59 aa3.89□□□□□ -1.79
SKN1YGR143W COX8P04039 78 aa3.88□□□□□ -1.79
SKN1YGR143W YBR201C-AQ2V2Q3 67 aa3.88□□□□□ -1.79
SKN1YGR143W MDN1Q12019 4910 aaKnown RBP3.88□□□□□ -1.79
SKN1YGR143W YDR115WQ04598 105 aa3.88□□□□□ -1.79
SKN1YGR143W YPR195CQ06594 109 aa3.88□□□□□ -1.79
SKN1YGR143W YNL162W-AQ3E7A8 72 aa3.88□□□□□ -1.79
SKN1YGR143W YAR064WP39563 99 aa3.87□□□□□ -1.79
SKN1YGR143W YJR085CP47131 105 aaKnown RBP3.87□□□□□ -1.79
SKN1YGR143W PMP3P87284 55 aa3.86□□□□□ -1.79
SKN1YGR143W MVB12P42939 101 aa3.85□□□□□ -1.79
SKN1YGR143W YBR230W-AQ3E762 66 aa3.85□□□□□ -1.79
SKN1YGR143W YJL127C-BQ3E828 52 aa3.85□□□□□ -1.79
SKN1YGR143W YLR122CQ12312 125 aa3.84□□□□□ -1.79
SKN1YGR143W YOR011W-AQ3E807 68 aa3.84□□□□□ -1.79
SKN1YGR143W TAR1Q8TGM6 124 aa3.83□□□□□ -1.8
SKN1YGR143W YOL097W-AQ3E7Y9 61 aa3.82□□□□□ -1.8
SKN1YGR143W YOR072WQ08486 104 aa3.81□□□□□ -1.8
SKN1YGR143W YLR255CO13574 117 aa3.8□□□□□ -1.8
SKN1YGR143W YGL041C-BQ3E750 60 aa3.79□□□□□ -1.8
SKN1YGR143W YNL146C-AQ3E7Z1 64 aa3.78□□□□□ -1.8
SKN1YGR143W YLR307C-AQ3E825 87 aa3.78□□□□□ -1.8
SKN1YGR143W DDR2P89113 61 aa3.77□□□□□ -1.81
SKN1YGR143W RPL33BP41056 107 aaKnown RBP3.76□□□□□ -1.81
SKN1YGR143W RPL33AP05744 107 aaKnown RBP3.74□□□□□ -1.81
SKN1YGR143W YHR007C-AQ07074 71 aa3.72□□□□□ -1.81
SKN1YGR143W YAL067W-AQ8TGK6 75 aa3.72□□□□□ -1.81
SKN1YGR143W RDS3Q06835 107 aaPredicted RBP3.71□□□□□ -1.82
SKN1YGR143W YGR240C-AQ3E786 66 aa3.7□□□□□ -1.82
SKN1YGR143W YJR128WP47162 119 aa3.7□□□□□ -1.82
SKN1YGR143W YOR394C-AQ8TGJ0 55 aa3.69□□□□□ -1.82
SKN1YGR143W RPC10P40422 70 aa3.65□□□□□ -1.82
SKN1YGR143W YGR146C-AQ8TGT9 53 aa3.64□□□□□ -1.83
SKN1YGR143W COX7P10174 60 aa3.63□□□□□ -1.83
SKN1YGR143W GIS2P53849 153 aaKnown RBP RIP-Chip data3.63□□□□□ -1.83not detected
SKN1YGR143W YCR108CQ3E819 63 aa3.62□□□□□ -1.83
SKN1YGR143W YMR230W-AQ3E7B5 62 aa3.61□□□□□ -1.83
SKN1YGR143W YJL144WP47009 104 aa3.59□□□□□ -1.83
SKN1YGR143W YBL044WP38194 122 aa3.59□□□□□ -1.84
SKN1YGR143W YFL067WP43537 175 aa3.59□□□□□ -1.84
SKN1YGR143W LCL1Q02786 101 aa3.59□□□□□ -1.84
SKN1YGR143W RPL37BP51402 88 aaKnown RBP3.56□□□□□ -1.84
SKN1YGR143W OLI1P61829 76 aa3.54□□□□□ -1.84
SKN1YGR143W YLL066W-BQ8TGJ7 56 aa3.49□□□□□ -1.85
SKN1YGR143W YOR316C-AQ3E806 69 aa3.47□□□□□ -1.85
SKN1YGR143W YBR016WP38216 128 aa3.44□□□□□ -1.86
SKN1YGR143W YHR073W-AP0C5N7 58 aa3.42□□□□□ -1.86
SKN1YGR143W YJL009WP47078 108 aa3.37□□□□□ -1.87
SKN1YGR143W YDR034C-AP0C289 58 aa3.36□□□□□ -1.87
SKN1YGR143W YBR072C-AQ3E794 53 aa3.29□□□□□ -1.88
SKN1YGR143W HHY1P39982 102 aa3.27□□□□□ -1.89
SKN1YGR143W RPL37AP49166 88 aaKnown RBP3.21□□□□□ -1.89
SKN1YGR143W YOR072W-BQ3E832 53 aa3.14□□□□□ -1.91
SKN1YGR143W YOL164W-AQ3E7A5 60 aa2.98□□□□□ -1.93
SKN1YGR143W YHR086W-AQ3E746 53 aa2.96□□□□□ -1.94
SKN1YGR143W YML054C-AQ3E809 52 aa2.73□□□□□ -1.97
SKN1YGR143W YLR157W-EP0CF00 54 aa2.64□□□□□ -1.99
SKN1YGR143W Q0017Q9ZZX8 53 aa2.59□□□□□ -2
SKN1YGR143W YHR050W-AQ05451 56 aa2.41□□□□□ -2.02
SKN1YGR143W RPS29AP41057 56 aaKnown RBP2.3□□□□□ -2.04
SKN1YGR143W RPS29BP41058 56 aaKnown RBP2.25□□□□□ -2.05
Retrieved 63 of 5,963 RNA–protein pairs in 10.8 ms