RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 GRAMD1CQ8IYS0 662 aa13.76□□□□□ -0.21
SF3B3-202ENST00000562722 FRMD1Q8N878 549 aa13.76□□□□□ -0.21
SF3B3-202ENST00000562722 ZNF513Q8N8E2 541 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-202ENST00000562722 OLIG1Q8TAK6 271 aa13.76□□□□□ -0.21
SF3B3-202ENST00000562722 GZF1Q9H116 711 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-202ENST00000562722 DEC1Q9P2X7 70 aa13.76□□□□□ -0.21
SF3B3-202ENST00000562722 MAP1BP46821 2468 aaKnown RBP13.76□□□□□ -0.21
SF3B3-202ENST00000562722 PTPRDP23468 1912 aa13.76□□□□□ -0.21
SF3B3-202ENST00000562722 KMT2BQ9UMN6 2715 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-202ENST00000562722 CNOT1A5YKK6 2376 aaKnown RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 ATXN2Q99700 1313 aaKnown RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 CHD8Q9HCK8 2581 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 PVALEFA0A1B0GWK0 134 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 TNFRSF10BO14763 440 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 ZBTB24O43167 697 aaPredicted RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 TULP3O75386 442 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 CFIP05156 583 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 HSP90AA1P07900 732 aaKnown RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 CCDC130P13994 396 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 TRIM21P19474 475 aaKnown RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 PTGER3P43115 390 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 TUBP50607 506 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 EHHADHQ08426 723 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 LMAN2Q12907 356 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 LYSMD4Q5XG99 296 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 PLEKHO2Q8TD55 490 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 SLC2A14Q8TDB8 520 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 JAKMIP2Q96AA8 810 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 ZFRQ96KR1 1074 aaKnown RBP13.75□□□□□ -0.21
SF3B3-202ENST00000562722 VRTNQ9H8Y1 702 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 SPHK2Q9NRA0 654 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 EXOC1Q9NV70 894 aa13.75□□□□□ -0.21
SF3B3-202ENST00000562722 ZFHX4Q86UP3 3567 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 A0A0A0MRY4 1105 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 CDX4O14627 284 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 HOXC11O43248 304 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 TLR5O60602 858 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 ADAM23O75077 832 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 CEACAM1P13688 526 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 HOXB2P14652 356 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 DPP6P42658 865 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 WASP42768 502 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 ATXN3P54252 364 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 MAP3K7CLP57077 242 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 RPL6Q02878 288 aaKnown RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 GOLGA8FQ08AF8 430 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 GOLGA8DPQ0D2H9 430 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 GRAMD4Q6IC98 578 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 SDE2Q6IQ49 451 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 PAQR9Q6ZVX9 377 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 TMEM25Q86YD3 366 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 SYT12Q8IV01 421 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 FUKQ8N0W3 1084 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 DEFB119Q8N690 84 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 DEFB124Q8NES8 71 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 PARD3BQ8TEW8 1205 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 ERLEC1Q96DZ1 483 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 SDCBP2Q9H190 292 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 FBXO44Q9H4M3 255 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.74□□□□□ -0.215e-12■■■■■ 96.1
SF3B3-202ENST00000562722 TLR8Q9NR97 1041 aaKnown RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 FAM49BQ9NUQ9 324 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 DNAJC17Q9NVM6 304 aaKnown RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 COMMD8Q9NX08 183 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 EVLQ9UI08 416 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 MBD1Q9UIS9 605 aaPredicted RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 LSM7Q9UK45 103 aaKnown RBP13.74□□□□□ -0.21
SF3B3-202ENST00000562722 PCDHA7Q9UN72 937 aa13.74□□□□□ -0.21
SF3B3-202ENST00000562722 NEDD8-MDP1E9PL57 170 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 AP5Z1O43299 807 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 C4BPAP04003 597 aaKnown RBP13.73□□□□□ -0.21
SF3B3-202ENST00000562722 PROS1P07225 676 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SPINK2P20155 84 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 CSRP1P21291 193 aaKnown RBP13.73□□□□□ -0.21
SF3B3-202ENST00000562722 ADORA2BP29275 332 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 PIK3CAP42336 1068 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 NDST1P52848 882 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SGSM1Q2NKQ1 1148 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 MAP7D1Q3KQU3 841 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SNX30Q5VWJ9 437 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 RESP18Q5W5W9 173 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 CEP135Q66GS9 1140 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 UNQ6494/PRO21346Q6UXR6 183 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 ETFBKMTQ8IXQ9 262 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 PHTF2Q8N3S3 785 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 TERB1Q8NA31 727 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 WBP2Q969T9 261 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 XPO6Q96QU8 1125 aaKnown RBP13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SMOQ99835 787 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 GTPBP2Q9BX10 602 aaKnown RBP13.73□□□□□ -0.21
SF3B3-202ENST00000562722 BBS2Q9BXC9 721 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SLC32A1Q9H598 525 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 TMEM74BQ9NUR3 256 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 HMGXB4Q9UGU5 601 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 SERTAD1Q9UHV2 236 aa13.73□□□□□ -0.21
SF3B3-202ENST00000562722 THADAQ6YHU6 1953 aa13.72□□□□□ -0.21
SF3B3-202ENST00000562722 ABCA7Q8IZY2 2146 aa13.72□□□□□ -0.21
SF3B3-202ENST00000562722 C1QTNF9BB2RNN3 333 aa13.72□□□□□ -0.21
SF3B3-202ENST00000562722 TRIM24O15164 1050 aa13.72□□□□□ -0.21
SF3B3-202ENST00000562722 BEST1O76090 585 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms