RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 UPF2Q9HAU5 1272 aaKnown RBP15.13■□□□□ 0.01
VARS-228ENST00000495010 SPHK2Q9NRA0 654 aa15.13■□□□□ 0.01
VARS-228ENST00000495010 NXF1Q9UBU9 619 aaKnown RBP15.13■□□□□ 0.01
VARS-228ENST00000495010 FRYQ5TBA9 3013 aa15.13■□□□□ 0.01
VARS-228ENST00000495010 TNRC6BQ9UPQ9 1833 aaKnown RBP15.13■□□□□ 0.01
VARS-228ENST00000495010 HOXC11O43248 304 aaPredicted RBP15.12■□□□□ 0.01
VARS-228ENST00000495010 PHACTR2O75167 634 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CD2BP2O95400 341 aaKnown RBP15.12■□□□□ 0.01
VARS-228ENST00000495010 IRF1P10914 325 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CHRM1P11229 460 aaPredicted RBP15.12■□□□□ 0.01
VARS-228ENST00000495010 PDCP20941 246 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 SNRNP35Q16560 246 aaKnown RBP15.12■□□□□ 0.01
VARS-228ENST00000495010 C8orf34Q49A92 452 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 SYCP2LQ5T4T6 812 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 GRAMD4Q6IC98 578 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 BBS7Q8IWZ6 715 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 ETFBKMTQ8IXQ9 262 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CHPFQ8IZ52 775 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 PDILTQ8N807 584 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 TRIML1Q8N9V2 468 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 TERB1Q8NA31 727 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 SCFD1Q8WVM8 642 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CCDC127Q96BQ5 260 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 XPO6Q96QU8 1125 aaKnown RBP15.12■□□□□ 0.01
VARS-228ENST00000495010 CGRRF1Q99675 332 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CAPN10Q9HC96 672 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 CYP8B1Q9UNU6 501 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 MYOFQ9NZM1 2061 aa15.12■□□□□ 0.01
VARS-228ENST00000495010 IGF2RP11717 2491 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 PLXND1Q9Y4D7 1925 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 IGHV1OR15-9A0A0B4J2B8 117 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 A0A1W2PQD8 194 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 GNSP15586 552 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 PLEKHG6Q3KR16 790 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 TMEM25Q86YD3 366 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 OR2I1PQ8NGU4 316 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 SYAP1Q96A49 352 aaPredicted RBP15.11■□□□□ 0.01
VARS-228ENST00000495010 ERLEC1Q96DZ1 483 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 HSPA12BQ96MM6 686 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 KCNK16Q96T55 309 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 FAM124BQ9H5Z6 455 aaPredicted RBP15.11■□□□□ 0.01
VARS-228ENST00000495010 CCSER2Q9H7U1 834 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 DMAP1Q9NPF5 467 aaPredicted RBP15.11■□□□□ 0.01
VARS-228ENST00000495010 TMEM30AQ9NV96 361 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 DNAJC17Q9NVM6 304 aaKnown RBP15.11■□□□□ 0.01
VARS-228ENST00000495010 SUSD2Q9UGT4 822 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 NME7Q9Y5B8 376 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 ATRXP46100 2492 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 ADAMTS9Q9P2N4 1935 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 BAHCC1Q9P281 2608 aa15.11■□□□□ 0.01
VARS-228ENST00000495010 PI4KAP42356 2102 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 LAMA1P25391 3075 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 NEDD8-MDP1E9PL57 170 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 ATICP31939 592 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 TUBP50607 506 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 CYP2J2P51589 502 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 SLC5A3P53794 718 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 FAM193AP78312 1265 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 GOLGA8FQ08AF8 430 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 GOLGA8DPQ0D2H9 430 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 SLC14A1Q13336 389 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 PSMD6Q15008 389 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 TRIP6Q15654 476 aaKnown RBP15.1■□□□□ 0.01
VARS-228ENST00000495010 SNX30Q5VWJ9 437 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 GLIS3Q8NEA6 775 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 SCAMP5Q8TAC9 235 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 IPO4Q8TEX9 1081 aaKnown RBP15.1■□□□□ 0.01
VARS-228ENST00000495010 FOXJ1Q92949 421 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 HPS3Q969F9 1004 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 TNIP3Q96KP6 325 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 ZFRQ96KR1 1074 aaKnown RBP15.1■□□□□ 0.01
VARS-228ENST00000495010 BBS2Q9BXC9 721 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 DNAAF2Q9NVR5 837 aaKnown RBP15.1■□□□□ 0.01
VARS-228ENST00000495010 COMMD8Q9NX08 183 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 GMIPQ9P107 970 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 LSM7Q9UK45 103 aaKnown RBP15.1■□□□□ 0.01
VARS-228ENST00000495010 STARD13Q9Y3M8 1113 aa15.1■□□□□ 0.01
VARS-228ENST00000495010 CEP192Q8TEP8 1941 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 A0A1W2PQF6 199 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 FAM221BA6H8Z2 402 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 PCNX2A6NKB5 2137 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 CLIC2O15247 247 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 EIF3DO15371 548 aaKnown RBP eCLIP15.09■□□□□ 0.01
VARS-228ENST00000495010 SH3BP5O60239 455 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 CD59P13987 128 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 NDUFV2P19404 249 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 MYL6P60660 151 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 ASIC1P78348 528 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 AMPD3Q01432 767 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 CYP24A1Q07973 514 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 WDR45BQ5MNZ6 344 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 EGFLAMQ63HQ2 1017 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 RAB44Q7Z6P3 723 aaPredicted RBP15.09■□□□□ 0.01
VARS-228ENST00000495010 FAM35AQ86V20 835 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 PROSER1Q86XN7 944 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 SLC41A1Q8IVJ1 513 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 XXYLT1Q8NBI6 393 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 SMARCD1Q96GM5 515 aa15.09■□□□□ 0.01
VARS-228ENST00000495010 DUSP9Q99956 384 aaKnown RBP15.09■□□□□ 0.01
VARS-228ENST00000495010 TNMDQ9H2S6 317 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms