RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DEFB128Q7Z7B8 93 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 DEFB106AQ8N104 65 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 KRT222Q8N1A0 295 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 HAUS1Q96CS2 278 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 TBCBQ99426 244 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 SNRNP25Q9BV90 132 aaKnown RBP14.41□□□□□ -0.1
PTPRF-202ENST00000372405 HOMER3Q9NSC5 361 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.41□□□□□ -0.17e-6■□□□□ 8.6
PTPRF-202ENST00000372405 SAE1Q9UBE0 346 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-202ENST00000372405 KIAA0100Q14667 2235 aaKnown RBP14.41□□□□□ -0.1
PTPRF-202ENST00000372405 ZNF638Q14966 1978 aaKnown RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 COL4A6Q14031 1691 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 YJEFN3A6XGL0 299 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 E7ENQ6 273 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DAB1O75553 588 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 OR4Q2P0C623 313 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 IL4RP24394 825 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 IVDP26440 423 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 CDH6P55285 790 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DAOAP59103 153 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 YWHAZP63104 245 aaKnown RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DPYSL3Q14195 570 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 SYPL2Q5VXT5 272 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 SCYL2Q6P3W7 929 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 BBS12Q6ZW61 710 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 BNIPLQ7Z465 357 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 ABI1Q8IZP0 508 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 SIX6OS1Q8N1H7 587 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 MREGQ8N565 214 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DNAJC5GQ8N7S2 189 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 ATL2Q8NHH9 583 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 NT5C3BQ969T7 300 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 FAM149B1Q96BN6 582 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 FAM193BQ96PV7 902 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 SLC2A13Q96QE2 648 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 MAGEB5Q9BZ81 275 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 MARCH5Q9NX47 278 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 AGPSO00116 658 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 CST8O60676 142 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 OAZ2O95190 189 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DYNLT1P63172 113 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 PTK6Q13882 451 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 TRIP13Q15645 432 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 OASLQ15646 514 aaKnown RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 DRICH1Q6PGQ1 229 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-202ENST00000372405 PRUNE1Q86TP1 453 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 NPAS4Q8IUM7 802 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 THEM5Q8N1Q8 247 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 FBXO25Q8TCJ0 367 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 TEKT4Q8WW24 435 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 PIK3R5Q8WYR1 880 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 CCDC114Q96M63 670 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 CALN1Q9BXU9 219 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 LRFN2Q9ULH4 789 aa14.4□□□□□ -0.1
PTPRF-202ENST00000372405 ARHGEF37A1IGU5 675 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 MDM4O15151 490 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 USP17L7P0C7H9 530 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 HSPA9P38646 679 aaKnown RBP14.39□□□□□ -0.11
PTPRF-202ENST00000372405 PBX3P40426 434 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 SLC11A1P49279 550 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 CBX1P83916 185 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 BYSLQ13895 437 aaKnown RBP14.39□□□□□ -0.11
PTPRF-202ENST00000372405 PPP1R7Q15435 360 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 SLC25A52Q3SY17 297 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 BOLA3Q53S33 107 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 DCAF6Q58WW2 860 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 FBXO46Q6PJ61 603 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-202ENST00000372405 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.39□□□□□ -0.117e-8■□□□□ 9.6
PTPRF-202ENST00000372405 CCDC185Q8N715 623 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 GLIS1Q8NBF1 620 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 SLC35B2Q8TB61 432 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 ARMC5Q96C12 935 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 B3GALT6Q96L58 329 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 NPY6RQ99463 290 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 GPR62Q9BZJ7 368 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 CNGB3Q9NQW8 809 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 PCDH10Q9P2E7 1040 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 ADAM28Q9UKQ2 775 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 ATP11BQ9Y2G3 1177 aa14.39□□□□□ -0.11
PTPRF-202ENST00000372405 TADA2AO75478 443 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 FBXO21O94952 628 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 PECAM1P16284 738 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 PLTPP55058 493 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 TSPY1Q01534 308 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 OTUD4Q01804 1114 aaKnown RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 UAP1Q16222 522 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 STRADAQ7RTN6 431 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 TMEM173Q86WV6 379 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 FAM71BQ8TC56 605 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 ACTL9Q8TC94 416 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 GRK7Q8WTQ7 553 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 NKD2Q969F2 451 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 TXLNGYQ9BZA5 131 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 ZCWPW1Q9H0M4 648 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 POPDC2Q9HBU9 364 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 PCDH18Q9HCL0 1135 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 DMAP1Q9NPF5 467 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 MTMR10Q9NXD2 777 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 NAALADL1Q9UQQ1 740 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 LTBP2Q14767 1821 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms