RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NGEFQ8N5V2 710 aa11.17□□□□□ -0.62
PDLIM5-222ENST00000615540 SCAF11Q99590 1463 aaKnown RBP11.17□□□□□ -0.62
PDLIM5-222ENST00000615540 MCCP23508 829 aa11.17□□□□□ -0.62
PDLIM5-222ENST00000615540 WDR7Q9Y4E6 1490 aa11.17□□□□□ -0.62
PDLIM5-222ENST00000615540 DDX19BQ9UMR2 479 aa11.17□□□□□ -0.62
PDLIM5-222ENST00000615540 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
PDLIM5-222ENST00000615540 PSME1Q06323 249 aa11.16□□□□□ -0.62
PDLIM5-222ENST00000615540 RTEL1-TNFRSF6BF6WH68 1400 aa11.16□□□□□ -0.62
PDLIM5-222ENST00000615540 RILPL2Q969X0 211 aa11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 LNPKQ9C0E8 428 aa11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 TSPYL4Q9UJ04 414 aa11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 PTMAP06454 111 aaKnown RBP11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 FGD1P98174 961 aa11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 SLC26A8Q96RN1 970 aa11.15□□□□□ -0.62
PDLIM5-222ENST00000615540 SHANK2Q9UPX8 1470 aa11.15□□□□□ -0.63
PDLIM5-222ENST00000615540 TEX14Q8IWB6 1497 aa11.15□□□□□ -0.63
PDLIM5-222ENST00000615540 DHX29Q7Z478 1369 aaKnown RBP11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 ABCC2Q92887 1545 aa11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 SLFN5Q08AF3 891 aa11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 C1orf141Q5JVX7 400 aa11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 WWC1Q8IX03 1113 aa11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 RPGRIP1LQ68CZ1 1315 aa11.14□□□□□ -0.63
PDLIM5-222ENST00000615540 MAST1Q9Y2H9 1570 aa11.13□□□□□ -0.63
PDLIM5-222ENST00000615540 NPHP1O15259 732 aa11.13□□□□□ -0.63
PDLIM5-222ENST00000615540 HMMRO75330 724 aa11.13□□□□□ -0.63
PDLIM5-222ENST00000615540 FBLN1P23142 703 aa11.13□□□□□ -0.63
PDLIM5-222ENST00000615540 GNAI1P63096 354 aa11.13□□□□□ -0.63
PDLIM5-222ENST00000615540 THUMPD2Q9BTF0 503 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 PDZRN3Q9UPQ7 1066 aa11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 IDI1Q13907 227 aa11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 NLRP6P59044 892 aa11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 SLC52A1Q9NWF4 448 aa11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 KIAA1211Q6ZU35 1233 aa11.12□□□□□ -0.63
PDLIM5-222ENST00000615540 ESCO1Q5FWF5 840 aa11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 DENND4BO75064 1496 aaPredicted RBP11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 CHD1O14646 1710 aa11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 ABTB2Q8N961 1025 aa11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 ADGRL2O95490 1459 aa11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 MSH5O43196 834 aa11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 NAP1L5Q96NT1 182 aaPredicted RBP11.11□□□□□ -0.63
PDLIM5-222ENST00000615540 A2MP01023 1474 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 FKBP5Q13451 457 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 SULT6B1Q6IMI4 303 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 EIF2AK4Q9P2K8 1649 aaKnown RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 CEBPAP49715 358 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 FOXD4L6Q3SYB3 417 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 FOXD4L3Q6VB84 417 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 NME9Q86XW9 330 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 LRRIQ1Q96JM4 1722 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 XPCQ01831 940 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 KIF16BQ96L93 1317 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 SAMD9LQ8IVG5 1584 aa11.1□□□□□ -0.63
PDLIM5-222ENST00000615540 ABCC10Q5T3U5 1492 aa11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 GPRASP1Q5JY77 1395 aa11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 MIS18AQ9NYP9 233 aa11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 DCTN1Q14203 1278 aa11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 TTC37Q6PGP7 1564 aa11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 TWISTNBQ3B726 338 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-222ENST00000615540 TEFQ10587 303 aa11.08□□□□□ -0.63
PDLIM5-222ENST00000615540 NUDT16Q96DE0 195 aaKnown RBP11.08□□□□□ -0.63
PDLIM5-222ENST00000615540 GBP4Q96PP9 640 aa11.08□□□□□ -0.63
PDLIM5-222ENST00000615540 C14orf93Q9H972 538 aaKnown RBP11.08□□□□□ -0.64
PDLIM5-222ENST00000615540 EMILIN1Q9Y6C2 1016 aa11.08□□□□□ -0.64
PDLIM5-222ENST00000615540 ABCA8O94911 1581 aa11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 AIMP1Q12904 312 aaKnown RBP11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 API5Q9BZZ5 524 aaKnown RBP11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 MYO5CQ9NQX4 1742 aa11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 ASXL1Q8IXJ9 1541 aa11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 L1TD1Q5T7N2 865 aaKnown RBP11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 TMPOP42166 694 aaKnown RBP11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 WDR63Q8IWG1 891 aa11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 NKTRP30414 1462 aaKnown RBP11.07□□□□□ -0.64
PDLIM5-222ENST00000615540 ATAD2Q6PL18 1390 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 HSP90B1P14625 803 aaKnown RBP11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 GPATCH3Q96I76 525 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 ZNF518AQ6AHZ1 1483 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 DNTTIP2Q5QJE6 756 aaKnown RBP11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 DUSP27Q5VZP5 1158 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 CFAP44Q96MT7 982 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 TESK2Q96S53 571 aa11.06□□□□□ -0.64
PDLIM5-222ENST00000615540 BACH2Q9BYV9 841 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 MCM10Q7L590 875 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 C22orf23Q9BZE7 217 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 ARHGEF12Q9NZN5 1544 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 ATP7AQ04656 1500 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 MVPQ14764 893 aaKnown RBP11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 PARD3Q8TEW0 1356 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
PDLIM5-222ENST00000615540 EVA1CP58658 441 aa11.04□□□□□ -0.64
PDLIM5-222ENST00000615540 C9orf78Q9NZ63 289 aaPredicted RBP11.04□□□□□ -0.64
PDLIM5-222ENST00000615540 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
PDLIM5-222ENST00000615540 TMEM57Q8N5G2 664 aa11.04□□□□□ -0.64
PDLIM5-222ENST00000615540 USHBP1Q8N6Y0 703 aa11.04□□□□□ -0.64
PDLIM5-222ENST00000615540 ERCC6L2Q5T890 1561 aa11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 SLC4A2P04920 1241 aa11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 TAF7LQ5H9L4 462 aa11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 ZRSR1Q15695 479 aaKnown RBP11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 GORABQ5T7V8 394 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms