RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 Q3C1V9 767 aa7.82□□□□□ -1.16
CKS1BP3-201ENST00000600888 THAP11Q96EK4 314 aa7.82□□□□□ -1.16
CKS1BP3-201ENST00000600888 FMNL1O95466 1100 aaPredicted RBP7.81□□□□□ -1.16
CKS1BP3-201ENST00000600888 TMEM132AQ24JP5 1023 aa7.81□□□□□ -1.16
CKS1BP3-201ENST00000600888 RNF19BQ6ZMZ0 732 aa7.81□□□□□ -1.16
CKS1BP3-201ENST00000600888 SYMPKQ92797 1274 aaKnown RBP7.81□□□□□ -1.16
CKS1BP3-201ENST00000600888 PCMTD1Q96MG8 357 aaPredicted RBP7.81□□□□□ -1.16
CKS1BP3-201ENST00000600888 CSPP1Q1MSJ5 1256 aa7.8□□□□□ -1.16
CKS1BP3-201ENST00000600888 NKX2-3Q8TAU0 364 aa7.8□□□□□ -1.16
CKS1BP3-201ENST00000600888 SPSB2Q99619 263 aa7.8□□□□□ -1.16
CKS1BP3-201ENST00000600888 PLA2G2EQ9NZK7 142 aa7.8□□□□□ -1.16
CKS1BP3-201ENST00000600888 ATP1B4Q9UN42 357 aaPredicted RBP7.8□□□□□ -1.16
CKS1BP3-201ENST00000600888 C6orf229H3BNL8 230 aa7.79□□□□□ -1.16
CKS1BP3-201ENST00000600888 TLL1O43897 1013 aa7.79□□□□□ -1.16
CKS1BP3-201ENST00000600888 QPCTQ16769 361 aa7.79□□□□□ -1.16
CKS1BP3-201ENST00000600888 PRPF38BQ5VTL8 546 aaKnown RBP7.79□□□□□ -1.16
CKS1BP3-201ENST00000600888 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.79□□□□□ -1.16
CKS1BP3-201ENST00000600888 LILRB3O75022 631 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 ADH1BP00325 375 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 HRCP23327 699 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 MTMR2Q13614 643 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 IFFO2Q5TF58 517 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 CABLES1Q8TDN4 633 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 USB1Q9BQ65 265 aaKnown RBP7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 ZBTB3Q9H5J0 574 aa7.78□□□□□ -1.16
CKS1BP3-201ENST00000600888 SPDYE5A6NIY4 337 aa7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 NUTM2BA6NNL0 878 aaPredicted RBP7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 NUTM2EB1AL46 878 aaPredicted RBP7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 NUTM2DQ5VT03 806 aaPredicted RBP7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 RETREG3Q86VR2 466 aa7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 NUTM2AQ8IVF1 878 aaPredicted RBP7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 FAM160A2Q8N612 972 aaPredicted RBP7.77□□□□□ -1.17
CKS1BP3-201ENST00000600888 RTL5Q5HYW3 569 aaPredicted RBP7.75□□□□□ -1.17
CKS1BP3-201ENST00000600888 FBXO31Q5XUX0 539 aaPredicted RBP7.75□□□□□ -1.17
CKS1BP3-201ENST00000600888 PPP2R2DQ66LE6 453 aa7.75□□□□□ -1.17
CKS1BP3-201ENST00000600888 MSS51Q4VC12 460 aa7.74□□□□□ -1.17
CKS1BP3-201ENST00000600888 PRR7Q8TB68 274 aa7.74□□□□□ -1.17
CKS1BP3-201ENST00000600888 SLC6A16Q9GZN6 736 aa7.74□□□□□ -1.17
CKS1BP3-201ENST00000600888 S1PR4O95977 384 aa7.73□□□□□ -1.17
CKS1BP3-201ENST00000600888 CFAP99D6REC4 459 aa7.72□□□□□ -1.17
CKS1BP3-201ENST00000600888 PPP1R18Q6NYC8 613 aa7.72□□□□□ -1.17
CKS1BP3-201ENST00000600888 PRDM9Q9NQV7 894 aa7.72□□□□□ -1.17
CKS1BP3-201ENST00000600888 RFC5P40937 340 aa7.71□□□□□ -1.18
CKS1BP3-201ENST00000600888 MMP16P51512 607 aa7.71□□□□□ -1.18
CKS1BP3-201ENST00000600888 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.71□□□□□ -1.18
CKS1BP3-201ENST00000600888 DXOO77932 396 aaKnown RBP7.7□□□□□ -1.18
CKS1BP3-201ENST00000600888 JUNDP17535 347 aa7.7□□□□□ -1.18
CKS1BP3-201ENST00000600888 GGCXP38435 758 aa7.7□□□□□ -1.18
CKS1BP3-201ENST00000600888 DESI1Q6ICB0 168 aa7.7□□□□□ -1.18
CKS1BP3-201ENST00000600888 A0A0G2JS52 829 aa7.69□□□□□ -1.18
CKS1BP3-201ENST00000600888 RNF223E7ERA6 249 aa7.69□□□□□ -1.18
CKS1BP3-201ENST00000600888 PPEF1O14829 653 aaPredicted RBP7.69□□□□□ -1.18
CKS1BP3-201ENST00000600888 TMEM259Q4ZIN3 620 aa7.68□□□□□ -1.18
CKS1BP3-201ENST00000600888 TSC1Q92574 1164 aa7.68□□□□□ -1.18
CKS1BP3-201ENST00000600888 AP1G2O75843 785 aa7.67□□□□□ -1.18
CKS1BP3-201ENST00000600888 CTDSPL2Q05D32 466 aa7.67□□□□□ -1.18
CKS1BP3-201ENST00000600888 LYPD8Q6UX82 237 aa7.67□□□□□ -1.18
CKS1BP3-201ENST00000600888 HELBQ8NG08 1087 aaPredicted RBP7.67□□□□□ -1.18
CKS1BP3-201ENST00000600888 ANKLE1Q8NAG6 615 aa7.66□□□□□ -1.18
CKS1BP3-201ENST00000600888 PER1O15534 1290 aaPredicted RBP7.65□□□□□ -1.18
CKS1BP3-201ENST00000600888 PTPRNQ16849 979 aa7.65□□□□□ -1.18
CKS1BP3-201ENST00000600888 NUDT12Q9BQG2 462 aa7.65□□□□□ -1.18
CKS1BP3-201ENST00000600888 FCF1Q9Y324 198 aaKnown RBP7.65□□□□□ -1.18
CKS1BP3-201ENST00000600888 CCDC24Q8N4L8 307 aa7.64□□□□□ -1.19
CKS1BP3-201ENST00000600888 CCNYL3P0C7X3 344 aa7.63□□□□□ -1.19
CKS1BP3-201ENST00000600888 BANK1Q8NDB2 785 aa7.63□□□□□ -1.19
CKS1BP3-201ENST00000600888 EVA1BQ9NVM1 165 aa7.63□□□□□ -1.19
CKS1BP3-201ENST00000600888 USP17L8P0C7I0 530 aa7.62□□□□□ -1.19
CKS1BP3-201ENST00000600888 PLA2G2CQ5R387 149 aa7.62□□□□□ -1.19
CKS1BP3-201ENST00000600888 LRRN4Q8WUT4 740 aa7.62□□□□□ -1.19
CKS1BP3-201ENST00000600888 KCNH2Q12809 1159 aa7.61□□□□□ -1.19
CKS1BP3-201ENST00000600888 F12P00748 615 aaPredicted RBP7.6□□□□□ -1.19
CKS1BP3-201ENST00000600888 CTHP32929 405 aa7.6□□□□□ -1.19
CKS1BP3-201ENST00000600888 PTCRAQ6ISU1 281 aaPredicted RBP7.6□□□□□ -1.19
CKS1BP3-201ENST00000600888 SNRKQ9NRH2 765 aa7.6□□□□□ -1.19
CKS1BP3-201ENST00000600888 LIAT1Q6ZQX7 453 aa7.59□□□□□ -1.19
CKS1BP3-201ENST00000600888 EMID1Q96A84 441 aaPredicted RBP7.59□□□□□ -1.19
CKS1BP3-201ENST00000600888 MAP10Q9P2G4 905 aa7.59□□□□□ -1.19
CKS1BP3-201ENST00000600888 ZBTB24O43167 697 aaPredicted RBP7.58□□□□□ -1.2
CKS1BP3-201ENST00000600888 SLC19A1P41440 591 aa7.58□□□□□ -1.2
CKS1BP3-201ENST00000600888 RPIAP49247 311 aa7.58□□□□□ -1.2
CKS1BP3-201ENST00000600888 HMX1Q9NP08 348 aaPredicted RBP7.58□□□□□ -1.2
CKS1BP3-201ENST00000600888 PRKD2Q9BZL6 878 aa7.57□□□□□ -1.2
CKS1BP3-201ENST00000600888 UNC93B1Q9H1C4 597 aa7.57□□□□□ -1.2
CKS1BP3-201ENST00000600888 RGS20O76081 388 aa7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 CD2BP2O95400 341 aaKnown RBP7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 NR6A1Q15406 480 aa7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 MTMR14Q8NCE2 650 aa7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 EPS8L1Q8TE68 723 aa7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 GTF3C3Q9Y5Q9 886 aa7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 V9GY48 417 aaPredicted RBP7.56□□□□□ -1.2
CKS1BP3-201ENST00000600888 SOCS7O14512 581 aa7.55□□□□□ -1.2
CKS1BP3-201ENST00000600888 GJD4Q96KN9 370 aaPredicted RBP7.55□□□□□ -1.2
CKS1BP3-201ENST00000600888 TRIM34Q9BYJ4 488 aa7.55□□□□□ -1.2
CKS1BP3-201ENST00000600888 FLIIQ13045 1269 aa7.54□□□□□ -1.2
CKS1BP3-201ENST00000600888 TRIM32Q13049 653 aa7.54□□□□□ -1.2
CKS1BP3-201ENST00000600888 MCM6Q14566 821 aa7.54□□□□□ -1.2
CKS1BP3-201ENST00000600888 SPRYD7Q5W111 196 aa7.54□□□□□ -1.2
CKS1BP3-201ENST00000600888 ARMC2Q8NEN0 867 aa7.53□□□□□ -1.2
CKS1BP3-201ENST00000600888 BAP1Q92560 729 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms