RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 USP46P62068 366 aa9.26□□□□□ -0.93
LINC00560-201ENST00000564593 ZNF775Q96BV0 537 aaPredicted RBP9.26□□□□□ -0.93
LINC00560-201ENST00000564593 RNF40O75150 1001 aa9.25□□□□□ -0.93
LINC00560-201ENST00000564593 RFC5P40937 340 aa9.25□□□□□ -0.93
LINC00560-201ENST00000564593 MCM6Q14566 821 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 FBXO31Q5XUX0 539 aaPredicted RBP9.24□□□□□ -0.93
LINC00560-201ENST00000564593 PPP2R2DQ66LE6 453 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 HOXA2O43364 376 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 GGCXP38435 758 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 APLP1P51693 650 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 PCDHB15Q9Y5E8 787 aa9.24□□□□□ -0.93
LINC00560-201ENST00000564593 UBTFP17480 764 aaKnown RBP9.23□□□□□ -0.93
LINC00560-201ENST00000564593 NUTM2BA6NNL0 878 aaPredicted RBP9.22□□□□□ -0.93
LINC00560-201ENST00000564593 NUTM2EB1AL46 878 aaPredicted RBP9.22□□□□□ -0.93
LINC00560-201ENST00000564593 QPCTQ16769 361 aa9.22□□□□□ -0.93
LINC00560-201ENST00000564593 TMEM259Q4ZIN3 620 aa9.22□□□□□ -0.93
LINC00560-201ENST00000564593 NUTM2DQ5VT03 806 aaPredicted RBP9.22□□□□□ -0.93
LINC00560-201ENST00000564593 NUTM2AQ8IVF1 878 aaPredicted RBP9.22□□□□□ -0.93
LINC00560-201ENST00000564593 NKX2-3Q8TAU0 364 aa9.22□□□□□ -0.93
LINC00560-201ENST00000564593 LILRB3O75022 631 aa9.21□□□□□ -0.93
LINC00560-201ENST00000564593 CFHP08603 1231 aa9.21□□□□□ -0.93
LINC00560-201ENST00000564593 FDX1P10109 184 aa9.21□□□□□ -0.93
LINC00560-201ENST00000564593 BANK1Q8NDB2 785 aa9.21□□□□□ -0.93
LINC00560-201ENST00000564593 GRIPAP1Q4V328 841 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 SPDYE5A6NIY4 337 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 FUT2Q10981 343 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 PRPF38BQ5VTL8 546 aaKnown RBP9.2□□□□□ -0.94
LINC00560-201ENST00000564593 CABLES1Q8TDN4 633 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 NECTIN2Q92692 538 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 CLUAP1Q96AJ1 413 aa9.2□□□□□ -0.94
LINC00560-201ENST00000564593 GUCA2AQ02747 115 aa9.19□□□□□ -0.94
LINC00560-201ENST00000564593 RTL5Q5HYW3 569 aaPredicted RBP9.19□□□□□ -0.94
LINC00560-201ENST00000564593 HLA-CQ95604 372 aa9.19□□□□□ -0.94
LINC00560-201ENST00000564593 ZBTB3Q9H5J0 574 aa9.19□□□□□ -0.94
LINC00560-201ENST00000564593 PCDHGC3Q9UN70 934 aa9.19□□□□□ -0.94
LINC00560-201ENST00000564593 HRCP23327 699 aa9.18□□□□□ -0.94
LINC00560-201ENST00000564593 KMT5BQ4FZB7 885 aa9.18□□□□□ -0.94
LINC00560-201ENST00000564593 SNRKQ9NRH2 765 aa9.18□□□□□ -0.94
LINC00560-201ENST00000564593 A6NJR5 290 aa9.17□□□□□ -0.94
LINC00560-201ENST00000564593 AP1G2O75843 785 aa9.16□□□□□ -0.94
LINC00560-201ENST00000564593 ATP6V1AP38606 617 aa9.16□□□□□ -0.94
LINC00560-201ENST00000564593 RAD21O60216 631 aa9.16□□□□□ -0.94
LINC00560-201ENST00000564593 COPS2P61201 443 aa9.16□□□□□ -0.94
LINC00560-201ENST00000564593 TRIM67Q6ZTA4 783 aa9.16□□□□□ -0.94
LINC00560-201ENST00000564593 MTMR2Q13614 643 aa9.15□□□□□ -0.95
LINC00560-201ENST00000564593 ZPR1O75312 459 aa9.14□□□□□ -0.95
LINC00560-201ENST00000564593 POM121Q96HA1 1249 aa9.14□□□□□ -0.95
LINC00560-201ENST00000564593 C6orf229H3BNL8 230 aa9.13□□□□□ -0.95
LINC00560-201ENST00000564593 ACTN4O43707 911 aaKnown RBP9.12□□□□□ -0.95
LINC00560-201ENST00000564593 DGAT1O75907 488 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 SLC19A1P41440 591 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 MYT1Q01538 1121 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 PRR14Q9BWN1 585 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 TRAK2O60296 914 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 PUS10Q3MIT2 529 aaKnown RBP9.12□□□□□ -0.95
LINC00560-201ENST00000564593 PKDCCQ504Y2 493 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 MTMR14Q8NCE2 650 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 COG6Q9Y2V7 657 aa9.12□□□□□ -0.95
LINC00560-201ENST00000564593 USP17L8P0C7I0 530 aa9.11□□□□□ -0.95
LINC00560-201ENST00000564593 MORN1Q5T089 497 aa9.11□□□□□ -0.95
LINC00560-201ENST00000564593 PROSER2Q86WR7 435 aaPredicted RBP9.11□□□□□ -0.95
LINC00560-201ENST00000564593 TSC1Q92574 1164 aa9.11□□□□□ -0.95
LINC00560-201ENST00000564593 ARID3CA6NKF2 412 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 RNF223E7ERA6 249 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 PRR20EP86478 221 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 PRR20CP86479 221 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 PRR20DP86480 221 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 PRR20BP86481 221 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 PRR20AP86496 221 aa9.1□□□□□ -0.95
LINC00560-201ENST00000564593 SYMPKQ92797 1274 aaKnown RBP9.1□□□□□ -0.95
LINC00560-201ENST00000564593 EMID1Q96A84 441 aaPredicted RBP9.1□□□□□ -0.95
LINC00560-201ENST00000564593 APBB1O00213 710 aa9.09□□□□□ -0.95
LINC00560-201ENST00000564593 CTDSPL2Q05D32 466 aa9.09□□□□□ -0.95
LINC00560-201ENST00000564593 HELBQ8NG08 1087 aaPredicted RBP9.09□□□□□ -0.95
LINC00560-201ENST00000564593 ARXQ96QS3 562 aa9.09□□□□□ -0.95
LINC00560-201ENST00000564593 SLC27A5Q9Y2P5 690 aa9.09□□□□□ -0.95
LINC00560-201ENST00000564593 CFAP99D6REC4 459 aa9.08□□□□□ -0.96
LINC00560-201ENST00000564593 PRM3Q9NNZ6 103 aa9.08□□□□□ -0.96
LINC00560-201ENST00000564593 SOCS7O14512 581 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 Q3C1V9 767 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 SPRYD7Q5W111 196 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 ZNF598Q86UK7 904 aaKnown RBP9.07□□□□□ -0.96
LINC00560-201ENST00000564593 GDPD2Q9HCC8 539 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 POTECB2RU33 542 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 FNBP4Q8N3X1 1017 aaPredicted RBP9.07□□□□□ -0.96
LINC00560-201ENST00000564593 PRR7Q8TB68 274 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 C1orf115Q9H7X2 142 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 PCDHB3Q9Y5E6 796 aa9.07□□□□□ -0.96
LINC00560-201ENST00000564593 RETREG3Q86VR2 466 aa9.05□□□□□ -0.96
LINC00560-201ENST00000564593 ANKLE1Q8NAG6 615 aa9.05□□□□□ -0.96
LINC00560-201ENST00000564593 ZNF777Q9ULD5 760 aaPredicted RBP9.05□□□□□ -0.96
LINC00560-201ENST00000564593 ABL2P42684 1182 aa9.04□□□□□ -0.96
LINC00560-201ENST00000564593 ARID3AQ99856 593 aa9.04□□□□□ -0.96
LINC00560-201ENST00000564593 BLOC1S3Q6QNY0 202 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 SCUBE3Q8IX30 993 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 LRRN4Q8WUT4 740 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 TBC1D2BQ9UPU7 963 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 NR1I2O75469 434 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 TREML4Q6UXN2 200 aa9.03□□□□□ -0.96
LINC00560-201ENST00000564593 WWC1Q8IX03 1113 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms