RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 TRIM5Q9C035 493 aa18.63■□□□□ 0.57
CHD4-210ENST00000544040 CWC15Q9P013 229 aaKnown RBP18.63■□□□□ 0.57
CHD4-210ENST00000544040 PANK1Q8TE04 598 aa18.62■□□□□ 0.57
CHD4-210ENST00000544040 NEUROD6Q96NK8 337 aa18.62■□□□□ 0.57
CHD4-210ENST00000544040 NAT10Q9H0A0 1025 aaKnown RBP18.62■□□□□ 0.57
CHD4-210ENST00000544040 WASHC4Q2M389 1173 aa18.62■□□□□ 0.57
CHD4-210ENST00000544040 SDF4Q9BRK5 362 aa18.62■□□□□ 0.57
CHD4-210ENST00000544040 API5Q9BZZ5 524 aaKnown RBP18.61■□□□□ 0.57
CHD4-210ENST00000544040 SPC24Q8NBT2 197 aa18.61■□□□□ 0.57
CHD4-210ENST00000544040 FMNL2Q96PY5 1086 aa18.61■□□□□ 0.57
CHD4-210ENST00000544040 BRPF1P55201 1214 aaPredicted RBP18.61■□□□□ 0.57
CHD4-210ENST00000544040 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
CHD4-210ENST00000544040 DIAPH1O60610 1272 aaKnown RBP18.6■□□□□ 0.57
CHD4-210ENST00000544040 RB1CC1Q8TDY2 1594 aa18.6■□□□□ 0.57
CHD4-210ENST00000544040 TRAK2O60296 914 aa18.6■□□□□ 0.57
CHD4-210ENST00000544040 TSPYL1Q9H0U9 437 aa18.6■□□□□ 0.57
CHD4-210ENST00000544040 CCDC173Q0VFZ6 552 aa18.6■□□□□ 0.57
CHD4-210ENST00000544040 HSP90AB3PQ58FF7 597 aa18.59■□□□□ 0.57
CHD4-210ENST00000544040 RALYLQ86SE5 291 aaKnown RBP18.59■□□□□ 0.57
CHD4-210ENST00000544040 AIMP1Q12904 312 aaKnown RBP18.59■□□□□ 0.57
CHD4-210ENST00000544040 MPNDQ8N594 471 aa18.59■□□□□ 0.57
CHD4-210ENST00000544040 CARMIL2Q6F5E8 1435 aa18.58■□□□□ 0.57
CHD4-210ENST00000544040 ABCC8Q09428 1581 aa18.58■□□□□ 0.57
CHD4-210ENST00000544040 AXDND1Q5T1B0 1012 aaPredicted RBP18.58■□□□□ 0.57
CHD4-210ENST00000544040 EVC2Q86UK5 1308 aa18.58■□□□□ 0.57
CHD4-210ENST00000544040 ATP2B1P20020 1258 aa18.58■□□□□ 0.56
CHD4-210ENST00000544040 PRPF40AO75400 957 aaKnown RBP18.58■□□□□ 0.56
CHD4-210ENST00000544040 DDX58O95786 925 aaKnown RBP18.57■□□□□ 0.56
CHD4-210ENST00000544040 ERCC4Q92889 916 aaPredicted RBP18.57■□□□□ 0.56
CHD4-210ENST00000544040 ERC2O15083 957 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 CEBPZQ03701 1054 aaKnown RBP18.57■□□□□ 0.56
CHD4-210ENST00000544040 TSPY26PQ9H489 355 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 ROCK1Q13464 1354 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 HMOX1P09601 288 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 USP47Q96K76 1375 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 CCDC144AA2RUR9 1427 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 CWC22Q9HCG8 908 aaKnown RBP18.57■□□□□ 0.56
CHD4-210ENST00000544040 TSPYL4Q9UJ04 414 aa18.57■□□□□ 0.56
CHD4-210ENST00000544040 CDC45O75419 566 aa18.56■□□□□ 0.56
CHD4-210ENST00000544040 IL27Q8NEV9 243 aa18.56■□□□□ 0.56
CHD4-210ENST00000544040 CCDC66A2RUB6 948 aa18.55■□□□□ 0.56
CHD4-210ENST00000544040 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.55■□□□□ 0.56
CHD4-210ENST00000544040 LEKR1Q6ZMV7 388 aa18.55■□□□□ 0.56
CHD4-210ENST00000544040 BRMS1Q9HCU9 246 aa18.55■□□□□ 0.56
CHD4-210ENST00000544040 PKNOX2Q96KN3 472 aa18.54■□□□□ 0.56
CHD4-210ENST00000544040 RIC3Q7Z5B4 369 aa18.53■□□□□ 0.56
CHD4-210ENST00000544040 MTERF4Q7Z6M4 381 aaKnown RBP18.52■□□□□ 0.56
CHD4-210ENST00000544040 RUNDC1Q96C34 613 aa18.52■□□□□ 0.56
CHD4-210ENST00000544040 FSD1Q9BTV5 496 aa18.51■□□□□ 0.55
CHD4-210ENST00000544040 FIBPO43427 364 aa18.51■□□□□ 0.55
CHD4-210ENST00000544040 STK11IPQ8N1F8 1099 aa18.51■□□□□ 0.55
CHD4-210ENST00000544040 DNAJC2Q99543 621 aaKnown RBP18.5■□□□□ 0.55
CHD4-210ENST00000544040 FHOD3Q2V2M9 1422 aa18.5■□□□□ 0.55
CHD4-210ENST00000544040 MYO6Q9UM54 1294 aa18.5■□□□□ 0.55
CHD4-210ENST00000544040 KINO60870 393 aaKnown RBP18.5■□□□□ 0.55
CHD4-210ENST00000544040 LETM1O95202 739 aaPredicted RBP18.5■□□□□ 0.55
CHD4-210ENST00000544040 CT47B1P0C2W7 299 aaPredicted RBP18.5■□□□□ 0.55
CHD4-210ENST00000544040 RBM33Q96EV2 1170 aaKnown RBP18.5■□□□□ 0.55
CHD4-210ENST00000544040 NINLQ9Y2I6 1382 aa18.5■□□□□ 0.55
CHD4-210ENST00000544040 NEFHP12036 1026 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 PSMA5P28066 241 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 IKQ13123 557 aaPredicted RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 MAPK8IP2Q13387 824 aaPredicted RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 HSP90AB4PQ58FF6 505 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 SMARCE1Q969G3 411 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 DHX57Q6P158 1386 aaKnown RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 CNTROBQ8N137 903 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 MAGEC2Q9UBF1 373 aaPredicted RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 XBP1P17861 261 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 FAM177A1Q8N128 213 aaPredicted RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 UBTFL1P0CB47 393 aaPredicted RBP18.49■□□□□ 0.55
CHD4-210ENST00000544040 NEK4P51957 841 aa18.49■□□□□ 0.55
CHD4-210ENST00000544040 ANKRD62A6NC57 917 aa18.48■□□□□ 0.55
CHD4-210ENST00000544040 FILIP1LQ4L180 1135 aa18.48■□□□□ 0.55
CHD4-210ENST00000544040 C1orf115Q9H7X2 142 aa18.48■□□□□ 0.55
CHD4-210ENST00000544040 KLHL34Q8N239 644 aa18.47■□□□□ 0.55
CHD4-210ENST00000544040 TMEM132AQ24JP5 1023 aa18.47■□□□□ 0.55
CHD4-210ENST00000544040 FAM193AP78312 1265 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 GNAI1P63096 354 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 CDK5RAP3Q96JB5 506 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 SERPINC1P01008 464 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 STK3Q13188 491 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 ZNF428Q96B54 188 aa18.46■□□□□ 0.55
CHD4-210ENST00000544040 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
CHD4-210ENST00000544040 CENPHQ9H3R5 247 aa18.45■□□□□ 0.54
CHD4-210ENST00000544040 CCDC88BA6NC98 1476 aa18.45■□□□□ 0.54
CHD4-210ENST00000544040 FAM177BA6PVY3 158 aa18.45■□□□□ 0.54
CHD4-210ENST00000544040 PSME1Q06323 249 aa18.44■□□□□ 0.54
CHD4-210ENST00000544040 CCP110O43303 1012 aa18.44■□□□□ 0.54
CHD4-210ENST00000544040 ENOX2Q16206 610 aaKnown RBP18.44■□□□□ 0.54
CHD4-210ENST00000544040 NUTM2GQ5VZR2 741 aa18.44■□□□□ 0.54
CHD4-210ENST00000544040 VGFO15240 615 aaPredicted RBP18.43■□□□□ 0.54
CHD4-210ENST00000544040 UQCRHLA0A096LP55 91 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 UQCRHP07919 91 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 MBD3O95983 291 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 SYCP1Q15431 976 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 PAF1Q8N7H5 531 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 UACAQ9BZF9 1416 aa18.43■□□□□ 0.54
CHD4-210ENST00000544040 KRT18P05783 430 aaKnown RBP18.42■□□□□ 0.54
CHD4-210ENST00000544040 STK38Q15208 465 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 415.9 ms