RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 HLA-CQ95604 372 aa6.96□□□□□ -1.3
USP28-210ENST00000542033 USB1Q9BQ65 265 aaKnown RBP6.96□□□□□ -1.3
USP28-210ENST00000542033 SPDYE5A6NIY4 337 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 C6orf229H3BNL8 230 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 SPTLC1O15269 473 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 S1PR4O95977 384 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 NDUFV2P19404 249 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 MYSM1Q5VVJ2 828 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 RNF19BQ6ZMZ0 732 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 RIC3Q7Z5B4 369 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 RETREG3Q86VR2 466 aa6.95□□□□□ -1.3
USP28-210ENST00000542033 MTMR2Q13614 643 aa6.94□□□□□ -1.3
USP28-210ENST00000542033 TUSC1Q2TAM9 212 aa6.94□□□□□ -1.3
USP28-210ENST00000542033 CLK2P49760 499 aaKnown RBP6.93□□□□□ -1.3
USP28-210ENST00000542033 SH3D19Q5HYK7 790 aa6.93□□□□□ -1.3
USP28-210ENST00000542033 PRPF38BQ5VTL8 546 aaKnown RBP6.93□□□□□ -1.3
USP28-210ENST00000542033 ANKLE1Q8NAG6 615 aa6.93□□□□□ -1.3
USP28-210ENST00000542033 ZBTB3Q9H5J0 574 aa6.93□□□□□ -1.3
USP28-210ENST00000542033 PCDHGC3Q9UN70 934 aa6.93□□□□□ -1.3
USP28-210ENST00000542033 PLEKHG3A1L390 1219 aa6.92□□□□□ -1.3
USP28-210ENST00000542033 RNF223E7ERA6 249 aa6.92□□□□□ -1.3
USP28-210ENST00000542033 SKIV2LQ15477 1246 aaKnown RBP6.92□□□□□ -1.3
USP28-210ENST00000542033 FAM160A2Q8N612 972 aaPredicted RBP6.92□□□□□ -1.3
USP28-210ENST00000542033 ATP1B4Q9UN42 357 aaPredicted RBP6.92□□□□□ -1.3
USP28-210ENST00000542033 TMEM132AQ24JP5 1023 aa6.91□□□□□ -1.3
USP28-210ENST00000542033 GOPCQ9HD26 462 aa6.91□□□□□ -1.3
USP28-210ENST00000542033 NUTM2BA6NNL0 878 aaPredicted RBP6.9□□□□□ -1.3
USP28-210ENST00000542033 NUTM2EB1AL46 878 aaPredicted RBP6.9□□□□□ -1.3
USP28-210ENST00000542033 MMP16P51512 607 aa6.9□□□□□ -1.3
USP28-210ENST00000542033 CSPP1Q1MSJ5 1256 aa6.9□□□□□ -1.3
USP28-210ENST00000542033 NUTM2DQ5VT03 806 aaPredicted RBP6.9□□□□□ -1.3
USP28-210ENST00000542033 NUTM2AQ8IVF1 878 aaPredicted RBP6.9□□□□□ -1.3
USP28-210ENST00000542033 SYMPKQ92797 1274 aaKnown RBP6.9□□□□□ -1.3
USP28-210ENST00000542033 POLR3EQ9NVU0 708 aa6.9□□□□□ -1.3
USP28-210ENST00000542033 LIMD1Q9UGP4 676 aa6.9□□□□□ -1.3
USP28-210ENST00000542033 DXOO77932 396 aaKnown RBP6.89□□□□□ -1.31
USP28-210ENST00000542033 JUNDP17535 347 aa6.89□□□□□ -1.31
USP28-210ENST00000542033 HRCP23327 699 aa6.89□□□□□ -1.31
USP28-210ENST00000542033 PRDM9Q9NQV7 894 aa6.89□□□□□ -1.31
USP28-210ENST00000542033 PCDHB15Q9Y5E8 787 aa6.89□□□□□ -1.31
USP28-210ENST00000542033 V9GY48 417 aaPredicted RBP6.89□□□□□ -1.31
USP28-210ENST00000542033 PPEF1O14829 653 aaPredicted RBP6.88□□□□□ -1.31
USP28-210ENST00000542033 DESI1Q6ICB0 168 aa6.88□□□□□ -1.31
USP28-210ENST00000542033 PRR7Q8TB68 274 aa6.88□□□□□ -1.31
USP28-210ENST00000542033 PCMTD1Q96MG8 357 aaPredicted RBP6.88□□□□□ -1.31
USP28-210ENST00000542033 FCF1Q9Y324 198 aaKnown RBP6.88□□□□□ -1.31
USP28-210ENST00000542033 LILRB3O75022 631 aa6.87□□□□□ -1.31
USP28-210ENST00000542033 PRKD2Q9BZL6 878 aa6.87□□□□□ -1.31
USP28-210ENST00000542033 ZBTB24O43167 697 aaPredicted RBP6.86□□□□□ -1.31
USP28-210ENST00000542033 SLC19A1P41440 591 aa6.86□□□□□ -1.31
USP28-210ENST00000542033 QPCTQ16769 361 aa6.86□□□□□ -1.31
USP28-210ENST00000542033 HELBQ8NG08 1087 aaPredicted RBP6.86□□□□□ -1.31
USP28-210ENST00000542033 CABLES1Q8TDN4 633 aa6.86□□□□□ -1.31
USP28-210ENST00000542033 RPIAP49247 311 aa6.85□□□□□ -1.31
USP28-210ENST00000542033 PTPRNQ16849 979 aa6.85□□□□□ -1.31
USP28-210ENST00000542033 CCDC24Q8N4L8 307 aa6.85□□□□□ -1.31
USP28-210ENST00000542033 NUDT12Q9BQG2 462 aa6.85□□□□□ -1.31
USP28-210ENST00000542033 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP28-210ENST00000542033 TSC1Q92574 1164 aa6.84□□□□□ -1.31
USP28-210ENST00000542033 CFAP99D6REC4 459 aa6.83□□□□□ -1.32
USP28-210ENST00000542033 CD2BP2O95400 341 aaKnown RBP6.83□□□□□ -1.32
USP28-210ENST00000542033 CCNYL3P0C7X3 344 aa6.83□□□□□ -1.32
USP28-210ENST00000542033 PROCA1Q8NCQ7 364 aaPredicted RBP6.83□□□□□ -1.32
USP28-210ENST00000542033 RTL5Q5HYW3 569 aaPredicted RBP6.82□□□□□ -1.32
USP28-210ENST00000542033 PPP2R2DQ66LE6 453 aa6.82□□□□□ -1.32
USP28-210ENST00000542033 LYPD8Q6UX82 237 aa6.82□□□□□ -1.32
USP28-210ENST00000542033 Q6ZNB5 142 aa6.82□□□□□ -1.32
USP28-210ENST00000542033 PLA2G2CQ5R387 149 aa6.81□□□□□ -1.32
USP28-210ENST00000542033 SPRYD7Q5W111 196 aa6.81□□□□□ -1.32
USP28-210ENST00000542033 LIAT1Q6ZQX7 453 aa6.8□□□□□ -1.32
USP28-210ENST00000542033 ZNF598Q86UK7 904 aaKnown RBP6.8□□□□□ -1.32
USP28-210ENST00000542033 EVA1BQ9NVM1 165 aa6.8□□□□□ -1.32
USP28-210ENST00000542033 CTHP32929 405 aa6.79□□□□□ -1.32
USP28-210ENST00000542033 KCNH2Q12809 1159 aa6.79□□□□□ -1.32
USP28-210ENST00000542033 TRIM32Q13049 653 aa6.79□□□□□ -1.32
USP28-210ENST00000542033 ZNF697Q5TEC3 545 aa6.79□□□□□ -1.32
USP28-210ENST00000542033 RFC5P40937 340 aa6.78□□□□□ -1.32
USP28-210ENST00000542033 LAPTM4AQ15012 233 aa6.78□□□□□ -1.32
USP28-210ENST00000542033 TMEM259Q4ZIN3 620 aa6.78□□□□□ -1.32
USP28-210ENST00000542033 EMID1Q96A84 441 aaPredicted RBP6.78□□□□□ -1.32
USP28-210ENST00000542033 AP1G2O75843 785 aa6.77□□□□□ -1.33
USP28-210ENST00000542033 WNT7BP56706 349 aa6.77□□□□□ -1.33
USP28-210ENST00000542033 UNC93B1Q9H1C4 597 aa6.77□□□□□ -1.33
USP28-210ENST00000542033 ARMC2Q8NEN0 867 aa6.76□□□□□ -1.33
USP28-210ENST00000542033 PER1O15534 1290 aaPredicted RBP6.75□□□□□ -1.33
USP28-210ENST00000542033 F12P00748 615 aaPredicted RBP6.75□□□□□ -1.33
USP28-210ENST00000542033 CTDSPL2Q05D32 466 aa6.75□□□□□ -1.33
USP28-210ENST00000542033 PNMA1Q8ND90 353 aa6.75□□□□□ -1.33
USP28-210ENST00000542033 PDZRN3Q9UPQ7 1066 aa6.75□□□□□ -1.33
USP28-210ENST00000542033 USP17L8P0C7I0 530 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PRR20EP86478 221 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PRR20CP86479 221 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PRR20DP86480 221 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PRR20BP86481 221 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PRR20AP86496 221 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 PTCRAQ6ISU1 281 aaPredicted RBP6.74□□□□□ -1.33
USP28-210ENST00000542033 MAP10Q9P2G4 905 aa6.74□□□□□ -1.33
USP28-210ENST00000542033 APBB1O00213 710 aa6.73□□□□□ -1.33
USP28-210ENST00000542033 FOXC1Q12948 553 aa6.73□□□□□ -1.33
USP28-210ENST00000542033 NBPF14Q5TI25 921 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms