RNA–Protein interactions for RNA: ENST00000534412.5

PICALM-223, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-223	ENST00000534412	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.26	□□□□□ -0.61
PICALM-223	ENST00000534412	SYNJ2	O15056	1496 aa		11.25	□□□□□ -0.61
PICALM-223	ENST00000534412	PHOX2B	Q99453	314 aa		11.25	□□□□□ -0.61
PICALM-223	ENST00000534412	GRIN2B	Q13224	1484 aa		11.25	□□□□□ -0.61
PICALM-223	ENST00000534412	IRX2	Q9BZI1	471 aa	Predicted RBP	11.24	□□□□□ -0.61
PICALM-223	ENST00000534412	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.23	□□□□□ -0.61
PICALM-223	ENST00000534412	CUX1	P39880	1505 aa		11.22	□□□□□ -0.61
PICALM-223	ENST00000534412	KRI1	Q8N9T8	703 aa	Known RBP	11.22	□□□□□ -0.61
PICALM-223	ENST00000534412	TMUB1	Q9BVT8	246 aa		11.22	□□□□□ -0.61
PICALM-223	ENST00000534412	GAPVD1	Q14C86	1478 aa		11.2	□□□□□ -0.62
PICALM-223	ENST00000534412	CCDC102A	Q96A19	550 aa		11.2	□□□□□ -0.62
PICALM-223	ENST00000534412	PUS10	Q3MIT2	529 aa	Known RBP	11.19	□□□□□ -0.62
PICALM-223	ENST00000534412	PRKD2	Q9BZL6	878 aa		11.19	□□□□□ -0.62
PICALM-223	ENST00000534412	TLL1	O43897	1013 aa		11.18	□□□□□ -0.62
PICALM-223	ENST00000534412	GCGR	P47871	477 aa		11.18	□□□□□ -0.62
PICALM-223	ENST00000534412	MDM2	Q00987	491 aa	Predicted RBP	11.18	□□□□□ -0.62
PICALM-223	ENST00000534412	SCUBE3	Q8IX30	993 aa		11.18	□□□□□ -0.62
PICALM-223	ENST00000534412	ATP6V1A	P38606	617 aa		11.17	□□□□□ -0.62
PICALM-223	ENST00000534412	GRIPAP1	Q4V328	841 aa		11.17	□□□□□ -0.62
PICALM-223	ENST00000534412	ADH1B	P00325	375 aa		11.16	□□□□□ -0.62
PICALM-223	ENST00000534412	FUT2	Q10981	343 aa		11.16	□□□□□ -0.62
PICALM-223	ENST00000534412		V9GY48	417 aa	Predicted RBP	11.16	□□□□□ -0.62
PICALM-223	ENST00000534412	ABCA5	Q8WWZ7	1642 aa		11.15	□□□□□ -0.62
PICALM-223	ENST00000534412	ABCA10	Q8WWZ4	1543 aa		11.14	□□□□□ -0.63
PICALM-223	ENST00000534412	CLCN1	P35523	988 aa		11.14	□□□□□ -0.63
PICALM-223	ENST00000534412	PBRM1	Q86U86	1689 aa		11.14	□□□□□ -0.63
PICALM-223	ENST00000534412	MORN1	Q5T089	497 aa		11.13	□□□□□ -0.63
PICALM-223	ENST00000534412	SPSB2	Q99619	263 aa		11.13	□□□□□ -0.63
PICALM-223	ENST00000534412	SLC6A16	Q9GZN6	736 aa		11.13	□□□□□ -0.63
PICALM-223	ENST00000534412	GPCPD1	Q9NPB8	672 aa		11.13	□□□□□ -0.63
PICALM-223	ENST00000534412	RNF223	E7ERA6	249 aa		11.12	□□□□□ -0.63
PICALM-223	ENST00000534412	S1PR4	O95977	384 aa		11.12	□□□□□ -0.63
PICALM-223	ENST00000534412	CD46	P15529	392 aa		11.12	□□□□□ -0.63
PICALM-223	ENST00000534412	BARGIN	Q6ZT62	677 aa		11.12	□□□□□ -0.63
PICALM-223	ENST00000534412	ZC3H15	Q8WU90	426 aa	Known RBP	11.12	□□□□□ -0.63
PICALM-223	ENST00000534412	NUP160	Q12769	1436 aa		11.11	□□□□□ -0.63
PICALM-223	ENST00000534412	GRIN2A	Q12879	1464 aa		11.11	□□□□□ -0.63
PICALM-223	ENST00000534412	ERCC6L2	Q5T890	1561 aa		11.11	□□□□□ -0.63
PICALM-223	ENST00000534412	ZMYND10	O75800	440 aa		11.1	□□□□□ -0.63
PICALM-223	ENST00000534412	FMNL1	O95466	1100 aa	Predicted RBP	11.1	□□□□□ -0.63
PICALM-223	ENST00000534412	ANKLE1	Q8NAG6	615 aa		11.1	□□□□□ -0.63
PICALM-223	ENST00000534412	LAPTM4A	Q15012	233 aa		11.09	□□□□□ -0.63
PICALM-223	ENST00000534412	SLC27A5	Q9Y2P5	690 aa		11.09	□□□□□ -0.63
PICALM-223	ENST00000534412	KDM4A	O75164	1064 aa		11.08	□□□□□ -0.64
PICALM-223	ENST00000534412	ADAMTS12	P58397	1594 aa		11.07	□□□□□ -0.64
PICALM-223	ENST00000534412	CEP170	Q5SW79	1584 aa		11.07	□□□□□ -0.64
PICALM-223	ENST00000534412	SHROOM2	Q13796	1616 aa		11.07	□□□□□ -0.64
PICALM-223	ENST00000534412	PPEF1	O14829	653 aa	Predicted RBP	11.07	□□□□□ -0.64
PICALM-223	ENST00000534412	GFRA3	O60609	400 aa		11.06	□□□□□ -0.64
PICALM-223	ENST00000534412	SLC19A1	P41440	591 aa		11.06	□□□□□ -0.64
PICALM-223	ENST00000534412	USP46	P62068	366 aa		11.06	□□□□□ -0.64
PICALM-223	ENST00000534412	TTLL12	Q14166	644 aa	Predicted RBP	11.06	□□□□□ -0.64
PICALM-223	ENST00000534412		Q3C1V9	767 aa		11.06	□□□□□ -0.64
PICALM-223	ENST00000534412	SALL2	Q9Y467	1007 aa	Predicted RBP	11.06	□□□□□ -0.64
PICALM-223	ENST00000534412		Q6ZNB5	142 aa		11.05	□□□□□ -0.64
PICALM-223	ENST00000534412	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.05	□□□□□ -0.64
PICALM-223	ENST00000534412	NUTM1	Q86Y26	1132 aa		11.04	□□□□□ -0.64
PICALM-223	ENST00000534412	FHAD1	B1AJZ9	1412 aa		11.03	□□□□□ -0.64
PICALM-223	ENST00000534412	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.03	□□□□□ -0.64
PICALM-223	ENST00000534412	THAP11	Q96EK4	314 aa		11.03	□□□□□ -0.64
PICALM-223	ENST00000534412	BRICD5	Q6PL45	260 aa		11.02	□□□□□ -0.65
PICALM-223	ENST00000534412	ERICH3	Q5RHP9	1530 aa		11	□□□□□ -0.65
PICALM-223	ENST00000534412	SSTR3	P32745	418 aa	Predicted RBP	11	□□□□□ -0.65
PICALM-223	ENST00000534412	AMHR2	Q16671	573 aa		11	□□□□□ -0.65
PICALM-223	ENST00000534412	PDZRN3	Q9UPQ7	1066 aa		11	□□□□□ -0.65
PICALM-223	ENST00000534412	KIF13A	Q9H1H9	1805 aa		10.99	□□□□□ -0.65
PICALM-223	ENST00000534412	NRG2	O14511	850 aa	Predicted RBP	10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	HOXA2	O43364	376 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	SLC24A1	O60721	1099 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	MSS51	Q4VC12	460 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	SPRYD7	Q5W111	196 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	RNF19B	Q6ZMZ0	732 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	FAM160A2	Q8N612	972 aa	Predicted RBP	10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	AK7	Q96M32	723 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	TOP2B	Q02880	1626 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	BIVM-ERCC5	R4GMW8	1640 aa		10.98	□□□□□ -0.65
PICALM-223	ENST00000534412	ZNF598	Q86UK7	904 aa	Known RBP	10.97	□□□□□ -0.65
PICALM-223	ENST00000534412	REPIN1	Q9BWE0	567 aa	Known RBP	10.97	□□□□□ -0.65
PICALM-223	ENST00000534412	FCF1	Q9Y324	198 aa	Known RBP	10.97	□□□□□ -0.65
PICALM-223	ENST00000534412	PRG4	Q92954	1404 aa	Predicted RBP	10.97	□□□□□ -0.65
PICALM-223	ENST00000534412	ABCC10	Q5T3U5	1492 aa		10.97	□□□□□ -0.65
PICALM-223	ENST00000534412	MAPKBP1	O60336	1514 aa		10.96	□□□□□ -0.65
PICALM-223	ENST00000534412	LIAT1	Q6ZQX7	453 aa		10.96	□□□□□ -0.65
PICALM-223	ENST00000534412	USB1	Q9BQ65	265 aa	Known RBP	10.96	□□□□□ -0.65
PICALM-223	ENST00000534412	ZNF697	Q5TEC3	545 aa		10.95	□□□□□ -0.66
PICALM-223	ENST00000534412	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.95	□□□□□ -0.66
PICALM-223	ENST00000534412	EMID1	Q96A84	441 aa	Predicted RBP	10.94	□□□□□ -0.66
PICALM-223	ENST00000534412	BCAN	Q96GW7	911 aa		10.94	□□□□□ -0.66
PICALM-223	ENST00000534412	PRDM9	Q9NQV7	894 aa		10.94	□□□□□ -0.66
PICALM-223	ENST00000534412	RUSC2	Q8N2Y8	1516 aa		10.94	□□□□□ -0.66
PICALM-223	ENST00000534412	TRIM66	O15016	1216 aa		10.93	□□□□□ -0.66
PICALM-223	ENST00000534412	ZBTB24	O43167	697 aa	Predicted RBP	10.93	□□□□□ -0.66
PICALM-223	ENST00000534412	PLA2G2C	Q5R387	149 aa		10.93	□□□□□ -0.66
PICALM-223	ENST00000534412	HLA-C	Q95604	372 aa		10.93	□□□□□ -0.66
PICALM-223	ENST00000534412	DIP2B	Q9P265	1576 aa		10.93	□□□□□ -0.66
PICALM-223	ENST00000534412	CD2BP2	O95400	341 aa	Known RBP	10.92	□□□□□ -0.66
PICALM-223	ENST00000534412	RPIA	P49247	311 aa		10.92	□□□□□ -0.66
PICALM-223	ENST00000534412	GUCA2A	Q02747	115 aa		10.91	□□□□□ -0.66
PICALM-223	ENST00000534412	FDX1	P10109	184 aa		10.9	□□□□□ -0.66
PICALM-223	ENST00000534412	FAM69C	Q0P6D2	419 aa		10.9	□□□□□ -0.66

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