RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 BRICD5Q6PL45 260 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 CABLES1Q8TDN4 633 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 ZNF516Q92618 1163 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 SYMPKQ92797 1274 aaKnown RBP9.43□□□□□ -0.9
CD44-215ENST00000525241 THAP11Q96EK4 314 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 IL21Q9HBE4 155 aa9.43□□□□□ -0.9
CD44-215ENST00000525241 SALL2Q9Y467 1007 aaPredicted RBP9.43□□□□□ -0.9
CD44-215ENST00000525241 ZPR1O75312 459 aa9.42□□□□□ -0.9
CD44-215ENST00000525241 Q3C1V9 767 aa9.42□□□□□ -0.9
CD44-215ENST00000525241 PPP2R2DQ66LE6 453 aa9.42□□□□□ -0.9
CD44-215ENST00000525241 RNF19BQ6ZMZ0 732 aa9.42□□□□□ -0.9
CD44-215ENST00000525241 ATP1B4Q9UN42 357 aaPredicted RBP9.42□□□□□ -0.9
CD44-215ENST00000525241 ZBTB3Q9H5J0 574 aa9.41□□□□□ -0.9
CD44-215ENST00000525241 C6orf229H3BNL8 230 aa9.4□□□□□ -0.9
CD44-215ENST00000525241 ITGBL1O95965 494 aaPredicted RBP9.4□□□□□ -0.9
CD44-215ENST00000525241 MTMR2Q13614 643 aa9.4□□□□□ -0.9
CD44-215ENST00000525241 RTL5Q5HYW3 569 aaPredicted RBP9.4□□□□□ -0.9
CD44-215ENST00000525241 FMNL1O95466 1100 aaPredicted RBP9.39□□□□□ -0.91
CD44-215ENST00000525241 SPDYE5A6NIY4 337 aa9.38□□□□□ -0.91
CD44-215ENST00000525241 NUTM2BA6NNL0 878 aaPredicted RBP9.38□□□□□ -0.91
CD44-215ENST00000525241 NUTM2EB1AL46 878 aaPredicted RBP9.38□□□□□ -0.91
CD44-215ENST00000525241 TLL1O43897 1013 aa9.38□□□□□ -0.91
CD44-215ENST00000525241 NUTM2DQ5VT03 806 aaPredicted RBP9.38□□□□□ -0.91
CD44-215ENST00000525241 NUTM2AQ8IVF1 878 aaPredicted RBP9.38□□□□□ -0.91
CD44-215ENST00000525241 RETREG3Q86VR2 466 aa9.37□□□□□ -0.91
CD44-215ENST00000525241 SPSB2Q99619 263 aa9.37□□□□□ -0.91
CD44-215ENST00000525241 USB1Q9BQ65 265 aaKnown RBP9.37□□□□□ -0.91
CD44-215ENST00000525241 CFAP99D6REC4 459 aa9.36□□□□□ -0.91
CD44-215ENST00000525241 RFC5P40937 340 aa9.36□□□□□ -0.91
CD44-215ENST00000525241 KCNC4Q03721 635 aa9.36□□□□□ -0.91
CD44-215ENST00000525241 FAM160A2Q8N612 972 aaPredicted RBP9.36□□□□□ -0.91
CD44-215ENST00000525241 NKX2-3Q8TAU0 364 aa9.36□□□□□ -0.91
CD44-215ENST00000525241 ADH1BP00325 375 aa9.35□□□□□ -0.91
CD44-215ENST00000525241 PRR7Q8TB68 274 aa9.35□□□□□ -0.91
CD44-215ENST00000525241 MSS51Q4VC12 460 aa9.34□□□□□ -0.91
CD44-215ENST00000525241 GTF3C3Q9Y5Q9 886 aa9.33□□□□□ -0.92
CD44-215ENST00000525241 TMEM259Q4ZIN3 620 aa9.31□□□□□ -0.92
CD44-215ENST00000525241 DESI1Q6ICB0 168 aa9.31□□□□□ -0.92
CD44-215ENST00000525241 PRDM9Q9NQV7 894 aa9.31□□□□□ -0.92
CD44-215ENST00000525241 PLSCR2Q9NRY7 297 aa9.31□□□□□ -0.92
CD44-215ENST00000525241 MMP16P51512 607 aa9.3□□□□□ -0.92
CD44-215ENST00000525241 SLC6A16Q9GZN6 736 aa9.3□□□□□ -0.92
CD44-215ENST00000525241 AP1G2O75843 785 aa9.29□□□□□ -0.92
CD44-215ENST00000525241 DXOO77932 396 aaKnown RBP9.29□□□□□ -0.92
CD44-215ENST00000525241 JUNDP17535 347 aa9.29□□□□□ -0.92
CD44-215ENST00000525241 CTDSPL2Q05D32 466 aa9.29□□□□□ -0.92
CD44-215ENST00000525241 IFFO2Q5TF58 517 aa9.29□□□□□ -0.92
CD44-215ENST00000525241 S1PR4O95977 384 aa9.28□□□□□ -0.92
CD44-215ENST00000525241 BANK1Q8NDB2 785 aa9.28□□□□□ -0.92
CD44-215ENST00000525241 HELBQ8NG08 1087 aaPredicted RBP9.28□□□□□ -0.92
CD44-215ENST00000525241 TSC1Q92574 1164 aa9.28□□□□□ -0.92
CD44-215ENST00000525241 PER1O15534 1290 aaPredicted RBP9.27□□□□□ -0.93
CD44-215ENST00000525241 LYPD8Q6UX82 237 aa9.27□□□□□ -0.93
CD44-215ENST00000525241 PLA2G2EQ9NZK7 142 aa9.27□□□□□ -0.93
CD44-215ENST00000525241 USP17L8P0C7I0 530 aa9.26□□□□□ -0.93
CD44-215ENST00000525241 SNRKQ9NRH2 765 aa9.25□□□□□ -0.93
CD44-215ENST00000525241 PTPRNQ16849 979 aa9.24□□□□□ -0.93
CD44-215ENST00000525241 PPP1R18Q6NYC8 613 aa9.24□□□□□ -0.93
CD44-215ENST00000525241 LRRN4Q8WUT4 740 aa9.24□□□□□ -0.93
CD44-215ENST00000525241 RNF223E7ERA6 249 aa9.22□□□□□ -0.93
CD44-215ENST00000525241 PPEF1O14829 653 aaPredicted RBP9.22□□□□□ -0.93
CD44-215ENST00000525241 MCM6Q14566 821 aa9.22□□□□□ -0.93
CD44-215ENST00000525241 MTMR14Q8NCE2 650 aa9.22□□□□□ -0.93
CD44-215ENST00000525241 HMX1Q9NP08 348 aaPredicted RBP9.22□□□□□ -0.93
CD44-215ENST00000525241 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.22□□□□□ -0.93
CD44-215ENST00000525241 FLIIQ13045 1269 aa9.21□□□□□ -0.94
CD44-215ENST00000525241 NUDT12Q9BQG2 462 aa9.21□□□□□ -0.94
CD44-215ENST00000525241 SOCS7O14512 581 aa9.2□□□□□ -0.94
CD44-215ENST00000525241 F12P00748 615 aaPredicted RBP9.2□□□□□ -0.94
CD44-215ENST00000525241 CCNYL3P0C7X3 344 aa9.2□□□□□ -0.94
CD44-215ENST00000525241 GGCXP38435 758 aa9.2□□□□□ -0.94
CD44-215ENST00000525241 EVA1BQ9NVM1 165 aa9.2□□□□□ -0.94
CD44-215ENST00000525241 FCF1Q9Y324 198 aaKnown RBP9.2□□□□□ -0.94
CD44-215ENST00000525241 ANKLE1Q8NAG6 615 aa9.19□□□□□ -0.94
CD44-215ENST00000525241 GJD4Q96KN9 370 aaPredicted RBP9.19□□□□□ -0.94
CD44-215ENST00000525241 A0A0G2JS52 829 aa9.18□□□□□ -0.94
CD44-215ENST00000525241 CCDC24Q8N4L8 307 aa9.18□□□□□ -0.94
CD44-215ENST00000525241 EPS8L1Q8TE68 723 aa9.18□□□□□ -0.94
CD44-215ENST00000525241 TRIM34Q9BYJ4 488 aa9.18□□□□□ -0.94
CD44-215ENST00000525241 MAP10Q9P2G4 905 aa9.18□□□□□ -0.94
CD44-215ENST00000525241 KCNH2Q12809 1159 aa9.17□□□□□ -0.94
CD44-215ENST00000525241 NR6A1Q15406 480 aa9.17□□□□□ -0.94
CD44-215ENST00000525241 PLA2G2CQ5R387 149 aa9.17□□□□□ -0.94
CD44-215ENST00000525241 PTCRAQ6ISU1 281 aaPredicted RBP9.17□□□□□ -0.94
CD44-215ENST00000525241 CTHP32929 405 aa9.16□□□□□ -0.94
CD44-215ENST00000525241 EMID1Q96A84 441 aaPredicted RBP9.13□□□□□ -0.95
CD44-215ENST00000525241 APBB1O00213 710 aa9.12□□□□□ -0.95
CD44-215ENST00000525241 GPR37L1O60883 481 aa9.12□□□□□ -0.95
CD44-215ENST00000525241 UNC93B1Q9H1C4 597 aa9.12□□□□□ -0.95
CD44-215ENST00000525241 UBTFP17480 764 aaKnown RBP9.11□□□□□ -0.95
CD44-215ENST00000525241 POM121Q96HA1 1249 aa9.11□□□□□ -0.95
CD44-215ENST00000525241 COG6Q9Y2V7 657 aa9.11□□□□□ -0.95
CD44-215ENST00000525241 LIAT1Q6ZQX7 453 aa9.1□□□□□ -0.95
CD44-215ENST00000525241 FKBPLQ9UIM3 349 aa9.1□□□□□ -0.95
CD44-215ENST00000525241 TBC1D2BQ9UPU7 963 aa9.1□□□□□ -0.95
CD44-215ENST00000525241 NDUFB9Q9Y6M9 179 aa9.1□□□□□ -0.95
CD44-215ENST00000525241 RPIAP49247 311 aa9.09□□□□□ -0.95
CD44-215ENST00000525241 GDPD2Q9HCC8 539 aa9.09□□□□□ -0.95
CD44-215ENST00000525241 ZBTB24O43167 697 aaPredicted RBP9.08□□□□□ -0.96
CD44-215ENST00000525241 ARMC2Q8NEN0 867 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms