RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 PRR7Q8TB68 274 aa9.11□□□□□ -0.95
BRCA1-224ENST00000497488 SPATA32Q96LK8 384 aa9.11□□□□□ -0.95
BRCA1-224ENST00000497488 HMX1Q9NP08 348 aaPredicted RBP9.11□□□□□ -0.95
BRCA1-224ENST00000497488 NDUFV2P19404 249 aa9.1□□□□□ -0.95
BRCA1-224ENST00000497488 PRPF38BQ5VTL8 546 aaKnown RBP9.1□□□□□ -0.95
BRCA1-224ENST00000497488 TTC13Q8NBP0 860 aa9.1□□□□□ -0.95
BRCA1-224ENST00000497488 CABLES1Q8TDN4 633 aa9.1□□□□□ -0.95
BRCA1-224ENST00000497488 GIPC2Q8TF65 315 aa9.1□□□□□ -0.95
BRCA1-224ENST00000497488 PCDHGA10Q9Y5H3 936 aa9.1□□□□□ -0.95
BRCA1-224ENST00000497488 SMARCA5O60264 1052 aaPredicted RBP9.09□□□□□ -0.95
BRCA1-224ENST00000497488 TMEM164Q5U3C3 297 aa9.09□□□□□ -0.95
BRCA1-224ENST00000497488 CERKQ8TCT0 537 aa9.09□□□□□ -0.95
BRCA1-224ENST00000497488 PTCD2Q8WV60 388 aaKnown RBP9.09□□□□□ -0.95
BRCA1-224ENST00000497488 ARID4AP29374 1257 aaPredicted RBP9.08□□□□□ -0.96
BRCA1-224ENST00000497488 TYW1BQ6NUM6 668 aa9.08□□□□□ -0.96
BRCA1-224ENST00000497488 TBC1D9Q6ZT07 1266 aa9.08□□□□□ -0.96
BRCA1-224ENST00000497488 ZMIZ1Q9ULJ6 1067 aa9.08□□□□□ -0.96
BRCA1-224ENST00000497488 LCE2DQ5TA82 110 aaPredicted RBP9.07□□□□□ -0.96
BRCA1-224ENST00000497488 RBM46Q8TBY0 533 aaKnown RBP9.07□□□□□ -0.96
BRCA1-224ENST00000497488 STK32AQ8WU08 396 aa9.07□□□□□ -0.96
BRCA1-224ENST00000497488 RBM27Q9P2N5 1060 aaKnown RBP9.07□□□□□ -0.96
BRCA1-224ENST00000497488 SOWAHDA6NJG2 315 aa9.06□□□□□ -0.96
BRCA1-224ENST00000497488 ATP9BO43861 1147 aa9.06□□□□□ -0.96
BRCA1-224ENST00000497488 VAMP1P23763 118 aa9.06□□□□□ -0.96
BRCA1-224ENST00000497488 KANK4Q5T7N3 995 aaPredicted RBP9.06□□□□□ -0.96
BRCA1-224ENST00000497488 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.05□□□□□ -0.96
BRCA1-224ENST00000497488 MARSP56192 900 aaKnown RBP9.05□□□□□ -0.96
BRCA1-224ENST00000497488 ZC3H6P61129 1189 aaKnown RBP9.05□□□□□ -0.96
BRCA1-224ENST00000497488 SEMA3FQ13275 785 aa9.05□□□□□ -0.96
BRCA1-224ENST00000497488 ZBTB3Q9H5J0 574 aa9.05□□□□□ -0.96
BRCA1-224ENST00000497488 SSFA2P28290 1259 aa9.04□□□□□ -0.96
BRCA1-224ENST00000497488 CTDSPL2Q05D32 466 aa9.04□□□□□ -0.96
BRCA1-224ENST00000497488 SULF1Q8IWU6 871 aa9.04□□□□□ -0.96
BRCA1-224ENST00000497488 UBXN4Q92575 508 aa9.04□□□□□ -0.96
BRCA1-224ENST00000497488 HOXB3P14651 431 aaPredicted RBP9.03□□□□□ -0.96
BRCA1-224ENST00000497488 NPAS4Q8IUM7 802 aa9.03□□□□□ -0.96
BRCA1-224ENST00000497488 CADPSQ9ULU8 1353 aa9.02□□□□□ -0.97
BRCA1-224ENST00000497488 ZNF326Q5BKZ1 582 aaKnown RBP9.02□□□□□ -0.97
BRCA1-224ENST00000497488 FAM163AQ96GL9 167 aaPredicted RBP9.02□□□□□ -0.97
BRCA1-224ENST00000497488 NOVA2Q9UNW9 492 aaKnown RBP9.02□□□□□ -0.97
BRCA1-224ENST00000497488 ANKRD33BA6NCL7 494 aa9.01□□□□□ -0.97
BRCA1-224ENST00000497488 RCCD1A6NED2 376 aa9.01□□□□□ -0.97
BRCA1-224ENST00000497488 DDX11L8A8MPP1 907 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 ST18O60284 1047 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 NCLP19338 710 aaKnown RBP8.99□□□□□ -0.97
BRCA1-224ENST00000497488 SERPINB4P48594 390 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 SF3A1Q15459 793 aaKnown RBP8.99□□□□□ -0.97
BRCA1-224ENST00000497488 NAALADL2Q58DX5 795 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 LRRN4Q8WUT4 740 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 POLR3GLQ9BT43 218 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 SLAIN2Q9P270 581 aa8.99□□□□□ -0.97
BRCA1-224ENST00000497488 SNPHO15079 494 aa8.98□□□□□ -0.97
BRCA1-224ENST00000497488 SLC34A2O95436 690 aa8.98□□□□□ -0.97
BRCA1-224ENST00000497488 C6orf132Q5T0Z8 1188 aa8.98□□□□□ -0.97
BRCA1-224ENST00000497488 PPP1R1BQ9UD71 204 aaPredicted RBP8.98□□□□□ -0.97
BRCA1-224ENST00000497488 RECKO95980 971 aa8.97□□□□□ -0.97
BRCA1-224ENST00000497488 PRSS12P56730 875 aa8.97□□□□□ -0.97
BRCA1-224ENST00000497488 ANKRD13AQ8IZ07 590 aa8.97□□□□□ -0.97
BRCA1-224ENST00000497488 HELBQ8NG08 1087 aaPredicted RBP8.97□□□□□ -0.97
BRCA1-224ENST00000497488 EPS8L1Q8TE68 723 aa8.97□□□□□ -0.97
BRCA1-224ENST00000497488 JPH4Q96JJ6 628 aa8.97□□□□□ -0.97
BRCA1-224ENST00000497488 BIN2Q9UBW5 565 aaPredicted RBP8.97□□□□□ -0.97
BRCA1-224ENST00000497488 CWC22Q9HCG8 908 aaKnown RBP8.96□□□□□ -0.98
BRCA1-224ENST00000497488 KDM4AO75164 1064 aa8.95□□□□□ -0.98
BRCA1-224ENST00000497488 FDX1P10109 184 aa8.95□□□□□ -0.98
BRCA1-224ENST00000497488 EIF4G2P78344 907 aaKnown RBP eCLIP8.95□□□□□ -0.98
BRCA1-224ENST00000497488 CLP1Q92989 425 aaKnown RBP8.95□□□□□ -0.98
BRCA1-224ENST00000497488 EYA1Q99502 592 aa8.95□□□□□ -0.98
BRCA1-224ENST00000497488 FAM196BA6NMK8 535 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 FAM69CQ0P6D2 419 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 FBXO33Q7Z6M2 555 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 NFATC2IPQ8NCF5 419 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 PNMA1Q8ND90 353 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 CDCA7LQ96GN5 454 aa8.94□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L3A6NCW0 530 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L4A6NCW7 530 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 USP46P62068 366 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 DOK7Q18PE1 504 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L2Q6R6M4 530 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L1Q7RTZ2 530 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 PCDHGC3Q9UN70 934 aa8.93□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L15C9J2P7 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L10C9JJH3 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L13C9JLJ4 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L12C9JPN9 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L11C9JVI0 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L21D6R901 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L18D6R9N7 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L22D6RA61 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L17D6RBQ6 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L19D6RCP7 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L20D6RJB6 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 PIK3CDO00329 1044 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 HOXA2O43364 376 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 USP17L24Q0WX57 530 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 PLEKHM2Q8IWE5 1019 aa8.92□□□□□ -0.98
BRCA1-224ENST00000497488 ANKRD62A6NC57 917 aa8.91□□□□□ -0.98
BRCA1-224ENST00000497488 ATP2B4P23634 1241 aa8.91□□□□□ -0.98
BRCA1-224ENST00000497488 CRTC2Q53ET0 693 aaPredicted RBP8.91□□□□□ -0.98
BRCA1-224ENST00000497488 TSC1Q92574 1164 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms