RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 MOXD2PA6NHM9 499 aa11.92□□□□□ -0.5
VIM-207ENST00000495528 PRR14Q9BWN1 585 aa11.92□□□□□ -0.5
VIM-207ENST00000495528 HOXA2O43364 376 aa11.91□□□□□ -0.5
VIM-207ENST00000495528 GUCA2AQ02747 115 aa11.91□□□□□ -0.5
VIM-207ENST00000495528 DIXDC1Q155Q3 683 aa11.91□□□□□ -0.5
VIM-207ENST00000495528 ATP6V1AP38606 617 aa11.9□□□□□ -0.5
VIM-207ENST00000495528 USP46P62068 366 aa11.9□□□□□ -0.5
VIM-207ENST00000495528 CSPP1Q1MSJ5 1256 aa11.9□□□□□ -0.5
VIM-207ENST00000495528 SH3D19Q5HYK7 790 aa11.9□□□□□ -0.5
VIM-207ENST00000495528 PCDHB3Q9Y5E6 796 aa11.9□□□□□ -0.5
VIM-207ENST00000495528 RIC3Q7Z5B4 369 aa11.89□□□□□ -0.51
VIM-207ENST00000495528 COPS2P61201 443 aa11.88□□□□□ -0.51
VIM-207ENST00000495528 GRIPAP1Q4V328 841 aa11.88□□□□□ -0.51
VIM-207ENST00000495528 PROCA1Q8NCQ7 364 aaPredicted RBP11.88□□□□□ -0.51
VIM-207ENST00000495528 HCSTQ9UBK5 93 aa11.88□□□□□ -0.51
VIM-207ENST00000495528 LIMD1Q9UGP4 676 aa11.88□□□□□ -0.51
VIM-207ENST00000495528 URB2Q14146 1524 aaKnown RBP11.87□□□□□ -0.51
VIM-207ENST00000495528 CLK2P49760 499 aaKnown RBP11.87□□□□□ -0.51
VIM-207ENST00000495528 SKIV2LQ15477 1246 aaKnown RBP11.87□□□□□ -0.51
VIM-207ENST00000495528 FDX1P10109 184 aa11.86□□□□□ -0.51
VIM-207ENST00000495528 RSBN1LQ6PCB5 846 aaPredicted RBP11.86□□□□□ -0.51
VIM-207ENST00000495528 BLOC1S3Q6QNY0 202 aa11.86□□□□□ -0.51
VIM-207ENST00000495528 NYAP1Q6ZVC0 841 aa11.86□□□□□ -0.51
VIM-207ENST00000495528 PCMTD1Q96MG8 357 aaPredicted RBP11.86□□□□□ -0.51
VIM-207ENST00000495528 MORN1Q5T089 497 aa11.85□□□□□ -0.51
VIM-207ENST00000495528 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
VIM-207ENST00000495528 SPTLC1O15269 473 aa11.84□□□□□ -0.51
VIM-207ENST00000495528 SLC27A5Q9Y2P5 690 aa11.84□□□□□ -0.51
VIM-207ENST00000495528 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
VIM-207ENST00000495528 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
VIM-207ENST00000495528 PCDHGC3Q9UN70 934 aa11.83□□□□□ -0.52
VIM-207ENST00000495528 MTRQ99707 1265 aa11.82□□□□□ -0.52
VIM-207ENST00000495528 SCUBE3Q8IX30 993 aa11.81□□□□□ -0.52
VIM-207ENST00000495528 SYMPKQ92797 1274 aaKnown RBP11.81□□□□□ -0.52
VIM-207ENST00000495528 NR1I2O75469 434 aa11.8□□□□□ -0.52
VIM-207ENST00000495528 CABLES1Q8TDN4 633 aa11.8□□□□□ -0.52
VIM-207ENST00000495528 C6orf229H3BNL8 230 aa11.79□□□□□ -0.52
VIM-207ENST00000495528 QPCTQ16769 361 aa11.79□□□□□ -0.52
VIM-207ENST00000495528 CCDC88BA6NC98 1476 aa11.77□□□□□ -0.52
VIM-207ENST00000495528 ZNF608Q9ULD9 1512 aaPredicted RBP11.77□□□□□ -0.52
VIM-207ENST00000495528 NUTM2BA6NNL0 878 aaPredicted RBP11.77□□□□□ -0.53
VIM-207ENST00000495528 NUTM2EB1AL46 878 aaPredicted RBP11.77□□□□□ -0.53
VIM-207ENST00000495528 GJA5P36382 358 aa11.77□□□□□ -0.53
VIM-207ENST00000495528 TJAP1Q5JTD0 557 aa11.77□□□□□ -0.53
VIM-207ENST00000495528 NUTM2DQ5VT03 806 aaPredicted RBP11.77□□□□□ -0.53
VIM-207ENST00000495528 RNF19BQ6ZMZ0 732 aa11.77□□□□□ -0.53
VIM-207ENST00000495528 NUTM2AQ8IVF1 878 aaPredicted RBP11.77□□□□□ -0.53
VIM-207ENST00000495528 ZNF516Q92618 1163 aa11.77□□□□□ -0.53
VIM-207ENST00000495528 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.77□□□□□ -0.53
VIM-207ENST00000495528 HRCP23327 699 aa11.76□□□□□ -0.53
VIM-207ENST00000495528 FBXO31Q5XUX0 539 aaPredicted RBP11.76□□□□□ -0.53
VIM-207ENST00000495528 IL21Q9HBE4 155 aa11.76□□□□□ -0.53
VIM-207ENST00000495528 TLL1O43897 1013 aa11.75□□□□□ -0.53
VIM-207ENST00000495528 MTMR2Q13614 643 aa11.75□□□□□ -0.53
VIM-207ENST00000495528 Q3C1V9 767 aa11.75□□□□□ -0.53
VIM-207ENST00000495528 ZBTB3Q9H5J0 574 aa11.75□□□□□ -0.53
VIM-207ENST00000495528 IFT140Q96RY7 1462 aa11.75□□□□□ -0.53
VIM-207ENST00000495528 ZPR1O75312 459 aa11.74□□□□□ -0.53
VIM-207ENST00000495528 FMNL1O95466 1100 aaPredicted RBP11.74□□□□□ -0.53
VIM-207ENST00000495528 RTL5Q5HYW3 569 aaPredicted RBP11.74□□□□□ -0.53
VIM-207ENST00000495528 LILRB3O75022 631 aa11.73□□□□□ -0.53
VIM-207ENST00000495528 TUSC1Q2TAM9 212 aa11.73□□□□□ -0.53
VIM-207ENST00000495528 BRICD5Q6PL45 260 aa11.72□□□□□ -0.53
VIM-207ENST00000495528 TSC1Q92574 1164 aa11.72□□□□□ -0.53
VIM-207ENST00000495528 TOPBP1Q92547 1522 aa11.71□□□□□ -0.53
VIM-207ENST00000495528 PRPF38BQ5VTL8 546 aaKnown RBP11.71□□□□□ -0.53
VIM-207ENST00000495528 NKX2-3Q8TAU0 364 aa11.71□□□□□ -0.53
VIM-207ENST00000495528 THAP11Q96EK4 314 aa11.71□□□□□ -0.53
VIM-207ENST00000495528 SPSB2Q99619 263 aa11.71□□□□□ -0.53
VIM-207ENST00000495528 RIMBP3CA6NJZ7 1639 aa11.7□□□□□ -0.54
VIM-207ENST00000495528 RIMBP3BA6NNM3 1639 aa11.7□□□□□ -0.54
VIM-207ENST00000495528 RIMBP3Q9UFD9 1639 aa11.7□□□□□ -0.54
VIM-207ENST00000495528 KCNC4Q03721 635 aa11.69□□□□□ -0.54
VIM-207ENST00000495528 USB1Q9BQ65 265 aaKnown RBP11.69□□□□□ -0.54
VIM-207ENST00000495528 CFAP99D6REC4 459 aa11.68□□□□□ -0.54
VIM-207ENST00000495528 RFC5P40937 340 aa11.68□□□□□ -0.54
VIM-207ENST00000495528 CYB5RLQ6IPT4 315 aa11.68□□□□□ -0.54
VIM-207ENST00000495528 RETREG3Q86VR2 466 aa11.68□□□□□ -0.54
VIM-207ENST00000495528 PRR7Q8TB68 274 aa11.68□□□□□ -0.54
VIM-207ENST00000495528 SALL2Q9Y467 1007 aaPredicted RBP11.68□□□□□ -0.54
VIM-207ENST00000495528 ARHGEF11O15085 1522 aa11.67□□□□□ -0.54
VIM-207ENST00000495528 GTF3C3Q9Y5Q9 886 aa11.67□□□□□ -0.54
VIM-207ENST00000495528 AQRO60306 1485 aaKnown RBP eCLIP11.66□□□□□ -0.542e-8■■■■■ 33.5
VIM-207ENST00000495528 SPDYE5A6NIY4 337 aa11.66□□□□□ -0.54
VIM-207ENST00000495528 ADH1BP00325 375 aa11.66□□□□□ -0.54
VIM-207ENST00000495528 PPP2R2DQ66LE6 453 aa11.66□□□□□ -0.54
VIM-207ENST00000495528 ABCC8Q09428 1581 aa11.66□□□□□ -0.54
VIM-207ENST00000495528 PRDM2Q13029 1718 aa11.66□□□□□ -0.54
VIM-207ENST00000495528 AP1G2O75843 785 aa11.65□□□□□ -0.54
VIM-207ENST00000495528 ITGBL1O95965 494 aaPredicted RBP11.65□□□□□ -0.54
VIM-207ENST00000495528 FAM160A2Q8N612 972 aaPredicted RBP11.65□□□□□ -0.54
VIM-207ENST00000495528 PRDM9Q9NQV7 894 aa11.65□□□□□ -0.54
VIM-207ENST00000495528 DNMBPQ6XZF7 1577 aa11.62□□□□□ -0.55
VIM-207ENST00000495528 SLC6A16Q9GZN6 736 aa11.62□□□□□ -0.55
VIM-207ENST00000495528 EIF4G3O43432 1585 aaKnown RBP11.62□□□□□ -0.55
VIM-207ENST00000495528 S1PR4O95977 384 aa11.61□□□□□ -0.55
VIM-207ENST00000495528 CTDSPL2Q05D32 466 aa11.61□□□□□ -0.55
VIM-207ENST00000495528 HELBQ8NG08 1087 aaPredicted RBP11.61□□□□□ -0.55
VIM-207ENST00000495528 MSS51Q4VC12 460 aa11.6□□□□□ -0.55
VIM-207ENST00000495528 JUNDP17535 347 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms