RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 S1PR4O95977 384 aa12.17□□□□□ -0.46
LTN1-206ENST00000486427 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
LTN1-206ENST00000486427 IL27Q8NEV9 243 aa12.17□□□□□ -0.46
LTN1-206ENST00000486427 LIMD1Q9UGP4 676 aa12.17□□□□□ -0.46
LTN1-206ENST00000486427 PCDHB15Q9Y5E8 787 aa12.17□□□□□ -0.46
LTN1-206ENST00000486427 GJA5P36382 358 aa12.15□□□□□ -0.46
LTN1-206ENST00000486427 PRDM9Q9NQV7 894 aa12.15□□□□□ -0.46
LTN1-206ENST00000486427 POLR3EQ9NVU0 708 aa12.15□□□□□ -0.46
LTN1-206ENST00000486427 SLC6A16Q9GZN6 736 aa12.14□□□□□ -0.47
LTN1-206ENST00000486427 RSPH6AQ9H0K4 717 aa12.14□□□□□ -0.47
LTN1-206ENST00000486427 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.14□□□□□ -0.47
LTN1-206ENST00000486427 CSPP1Q1MSJ5 1256 aa12.13□□□□□ -0.47
LTN1-206ENST00000486427 USB1Q9BQ65 265 aaKnown RBP12.13□□□□□ -0.47
LTN1-206ENST00000486427 C6orf229H3BNL8 230 aa12.12□□□□□ -0.47
LTN1-206ENST00000486427 PPEF1O14829 653 aaPredicted RBP12.12□□□□□ -0.47
LTN1-206ENST00000486427 CLK2P49760 499 aaKnown RBP12.12□□□□□ -0.47
LTN1-206ENST00000486427 MSS51Q4VC12 460 aa12.12□□□□□ -0.47
LTN1-206ENST00000486427 SH3D19Q5HYK7 790 aa12.12□□□□□ -0.47
LTN1-206ENST00000486427 RNF223E7ERA6 249 aa12.11□□□□□ -0.47
LTN1-206ENST00000486427 SKIV2LQ15477 1246 aaKnown RBP12.1□□□□□ -0.47
LTN1-206ENST00000486427 CABLES1Q8TDN4 633 aa12.1□□□□□ -0.47
LTN1-206ENST00000486427 GGCXP38435 758 aa12.09□□□□□ -0.47
LTN1-206ENST00000486427 MTMR2Q13614 643 aa12.09□□□□□ -0.47
LTN1-206ENST00000486427 QPCTQ16769 361 aa12.09□□□□□ -0.47
LTN1-206ENST00000486427 RETREG3Q86VR2 466 aa12.09□□□□□ -0.47
LTN1-206ENST00000486427 PROCA1Q8NCQ7 364 aaPredicted RBP12.09□□□□□ -0.47
LTN1-206ENST00000486427 HRCP23327 699 aa12.08□□□□□ -0.48
LTN1-206ENST00000486427 TUSC1Q2TAM9 212 aa12.08□□□□□ -0.48
LTN1-206ENST00000486427 MMP16P51512 607 aa12.06□□□□□ -0.48
LTN1-206ENST00000486427 PRPF38BQ5VTL8 546 aaKnown RBP12.06□□□□□ -0.48
LTN1-206ENST00000486427 FBXO31Q5XUX0 539 aaPredicted RBP12.06□□□□□ -0.48
LTN1-206ENST00000486427 ZBTB3Q9H5J0 574 aa12.06□□□□□ -0.48
LTN1-206ENST00000486427 LILRB3O75022 631 aa12.05□□□□□ -0.48
LTN1-206ENST00000486427 DXOO77932 396 aaKnown RBP12.05□□□□□ -0.48
LTN1-206ENST00000486427 PRR7Q8TB68 274 aa12.05□□□□□ -0.48
LTN1-206ENST00000486427 CFAP99D6REC4 459 aa12.04□□□□□ -0.48
LTN1-206ENST00000486427 ANKLE1Q8NAG6 615 aa12.04□□□□□ -0.48
LTN1-206ENST00000486427 SPDYE5A6NIY4 337 aa12.03□□□□□ -0.48
LTN1-206ENST00000486427 JUNDP17535 347 aa12.03□□□□□ -0.48
LTN1-206ENST00000486427 RTL5Q5HYW3 569 aaPredicted RBP12.03□□□□□ -0.48
LTN1-206ENST00000486427 PLA2G2CQ5R387 149 aa12.03□□□□□ -0.48
LTN1-206ENST00000486427 EMID1Q96A84 441 aaPredicted RBP12.03□□□□□ -0.48
LTN1-206ENST00000486427 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.03□□□□□ -0.48
LTN1-206ENST00000486427 FCF1Q9Y324 198 aaKnown RBP12.03□□□□□ -0.48
LTN1-206ENST00000486427 GOPCQ9HD26 462 aa12.02□□□□□ -0.49
LTN1-206ENST00000486427 NUTM2BA6NNL0 878 aaPredicted RBP12.01□□□□□ -0.49
LTN1-206ENST00000486427 NUTM2EB1AL46 878 aaPredicted RBP12.01□□□□□ -0.49
LTN1-206ENST00000486427 NUTM2DQ5VT03 806 aaPredicted RBP12.01□□□□□ -0.49
LTN1-206ENST00000486427 NUTM2AQ8IVF1 878 aaPredicted RBP12.01□□□□□ -0.49
LTN1-206ENST00000486427 ATP1B4Q9UN42 357 aaPredicted RBP11.99□□□□□ -0.49
LTN1-206ENST00000486427 RGS20O76081 388 aa11.98□□□□□ -0.49
LTN1-206ENST00000486427 PCMTD1Q96MG8 357 aaPredicted RBP11.98□□□□□ -0.49
LTN1-206ENST00000486427 PRKD2Q9BZL6 878 aa11.98□□□□□ -0.49
LTN1-206ENST00000486427 LIAT1Q6ZQX7 453 aa11.97□□□□□ -0.49
LTN1-206ENST00000486427 DESI1Q6ICB0 168 aa11.96□□□□□ -0.49
LTN1-206ENST00000486427 PPP2R2DQ66LE6 453 aa11.95□□□□□ -0.5
LTN1-206ENST00000486427 TSC1Q92574 1164 aa11.94□□□□□ -0.5
LTN1-206ENST00000486427 NUDT12Q9BQG2 462 aa11.94□□□□□ -0.5
LTN1-206ENST00000486427 PER1O15534 1290 aaPredicted RBP11.93□□□□□ -0.5
LTN1-206ENST00000486427 SLC19A1P41440 591 aa11.93□□□□□ -0.5
LTN1-206ENST00000486427 CCDC24Q8N4L8 307 aa11.93□□□□□ -0.5
LTN1-206ENST00000486427 PTPRNQ16849 979 aa11.92□□□□□ -0.5
LTN1-206ENST00000486427 LYPD8Q6UX82 237 aa11.92□□□□□ -0.5
LTN1-206ENST00000486427 V9GY48 417 aaPredicted RBP11.92□□□□□ -0.5
LTN1-206ENST00000486427 PTCRAQ6ISU1 281 aaPredicted RBP11.91□□□□□ -0.5
LTN1-206ENST00000486427 CCNYL3P0C7X3 344 aa11.9□□□□□ -0.5
LTN1-206ENST00000486427 RFC5P40937 340 aa11.9□□□□□ -0.5
LTN1-206ENST00000486427 CTDSPL2Q05D32 466 aa11.89□□□□□ -0.51
LTN1-206ENST00000486427 SPRYD7Q5W111 196 aa11.89□□□□□ -0.51
LTN1-206ENST00000486427 HELBQ8NG08 1087 aaPredicted RBP11.88□□□□□ -0.51
LTN1-206ENST00000486427 EVA1BQ9NVM1 165 aa11.88□□□□□ -0.51
LTN1-206ENST00000486427 RPIAP49247 311 aa11.87□□□□□ -0.51
LTN1-206ENST00000486427 AP1G2O75843 785 aa11.85□□□□□ -0.51
LTN1-206ENST00000486427 F12P00748 615 aaPredicted RBP11.85□□□□□ -0.51
LTN1-206ENST00000486427 KCNH2Q12809 1159 aa11.85□□□□□ -0.51
LTN1-206ENST00000486427 MAP10Q9P2G4 905 aa11.85□□□□□ -0.51
LTN1-206ENST00000486427 ZBTB24O43167 697 aaPredicted RBP11.84□□□□□ -0.51
LTN1-206ENST00000486427 TRIM32Q13049 653 aa11.84□□□□□ -0.51
LTN1-206ENST00000486427 LRRN4Q8WUT4 740 aa11.84□□□□□ -0.51
LTN1-206ENST00000486427 ZNF697Q5TEC3 545 aa11.83□□□□□ -0.52
LTN1-206ENST00000486427 ZNF598Q86UK7 904 aaKnown RBP11.83□□□□□ -0.52
LTN1-206ENST00000486427 CTHP32929 405 aa11.82□□□□□ -0.52
LTN1-206ENST00000486427 UNC93B1Q9H1C4 597 aa11.82□□□□□ -0.52
LTN1-206ENST00000486427 USP17L8P0C7I0 530 aa11.81□□□□□ -0.52
LTN1-206ENST00000486427 CD2BP2O95400 341 aaKnown RBP11.8□□□□□ -0.52
LTN1-206ENST00000486427 TRIM67Q6ZTA4 783 aa11.8□□□□□ -0.52
LTN1-206ENST00000486427 SKOR1P84550 965 aa11.78□□□□□ -0.52
LTN1-206ENST00000486427 TMEM259Q4ZIN3 620 aa11.78□□□□□ -0.52
LTN1-206ENST00000486427 HMX1Q9NP08 348 aaPredicted RBP11.78□□□□□ -0.52
LTN1-206ENST00000486427 TMEM132AQ24JP5 1023 aa11.77□□□□□ -0.53
LTN1-206ENST00000486427 PKD2L1Q9P0L9 805 aa11.77□□□□□ -0.53
LTN1-206ENST00000486427 LINC01559Q495D7 138 aa11.76□□□□□ -0.53
LTN1-206ENST00000486427 BAP1Q92560 729 aa11.76□□□□□ -0.53
LTN1-206ENST00000486427 GDF9O60383 454 aa11.75□□□□□ -0.53
LTN1-206ENST00000486427 SH3BP2P78314 561 aa11.74□□□□□ -0.53
LTN1-206ENST00000486427 FOXC1Q12948 553 aa11.74□□□□□ -0.53
LTN1-206ENST00000486427 NR6A1Q15406 480 aa11.74□□□□□ -0.53
LTN1-206ENST00000486427 EPS8L1Q8TE68 723 aa11.74□□□□□ -0.53
LTN1-206ENST00000486427 TNFRSF10AO00220 468 aa11.73□□□□□ -0.53
LTN1-206ENST00000486427 WNT7BP56706 349 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms