RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 SLC52A1Q9NWF4 448 aa13.81□□□□□ -0.2
COL27A1-204ENST00000477421 NFKBIBQ15653 356 aa13.8□□□□□ -0.2
COL27A1-204ENST00000477421 NOS1P29475 1434 aa13.8□□□□□ -0.2
COL27A1-204ENST00000477421 TRIM6-TRIM34B2RNG4 842 aa13.8□□□□□ -0.2
COL27A1-204ENST00000477421 PDE3AQ14432 1141 aa13.8□□□□□ -0.2
COL27A1-204ENST00000477421 NOB1Q9ULX3 412 aaKnown RBP13.8□□□□□ -0.2
COL27A1-204ENST00000477421 KCNJ4P48050 445 aa13.8□□□□□ -0.2
COL27A1-204ENST00000477421 TARBP1Q13395 1621 aaKnown RBP13.79□□□□□ -0.2
COL27A1-204ENST00000477421 FOXD4L5Q5VV16 416 aaPredicted RBP13.79□□□□□ -0.2
COL27A1-204ENST00000477421 FOXD4L4Q8WXT5 416 aaPredicted RBP13.79□□□□□ -0.2
COL27A1-204ENST00000477421 PLCH2O75038 1416 aa13.79□□□□□ -0.2
COL27A1-204ENST00000477421 DNMT1P26358 1616 aaKnown RBP13.78□□□□□ -0.2
COL27A1-204ENST00000477421 CARD14Q9BXL6 1004 aa13.78□□□□□ -0.2
COL27A1-204ENST00000477421 EIF2S2P20042 333 aaKnown RBP13.78□□□□□ -0.2
COL27A1-204ENST00000477421 NUP160Q12769 1436 aa13.78□□□□□ -0.2
COL27A1-204ENST00000477421 PARD3Q8TEW0 1356 aa13.77□□□□□ -0.2
COL27A1-204ENST00000477421 SPINK5Q9NQ38 1064 aaPredicted RBP13.77□□□□□ -0.21
COL27A1-204ENST00000477421 FRAT2O75474 233 aaPredicted RBP13.77□□□□□ -0.21
COL27A1-204ENST00000477421 GSE1Q14687 1217 aa13.77□□□□□ -0.21
COL27A1-204ENST00000477421 TMPOP42166 694 aaKnown RBP13.76□□□□□ -0.21
COL27A1-204ENST00000477421 ZNF330Q9Y3S2 320 aaPredicted RBP13.76□□□□□ -0.21
COL27A1-204ENST00000477421 SPATA31E1Q6ZUB1 1445 aa13.76□□□□□ -0.21
COL27A1-204ENST00000477421 SCAF11Q99590 1463 aaKnown RBP13.76□□□□□ -0.21
COL27A1-204ENST00000477421 CSB-PGBD3P0DP91 1061 aa13.76□□□□□ -0.21
COL27A1-204ENST00000477421 SULT6B1Q6IMI4 303 aa13.76□□□□□ -0.21
COL27A1-204ENST00000477421 DCTN1Q14203 1278 aa13.76□□□□□ -0.21
COL27A1-204ENST00000477421 RARSP54136 660 aaKnown RBP13.75□□□□□ -0.21
COL27A1-204ENST00000477421 GNAI1P63096 354 aa13.75□□□□□ -0.21
COL27A1-204ENST00000477421 KIF16BQ96L93 1317 aa13.75□□□□□ -0.21
COL27A1-204ENST00000477421 PBRM1Q86U86 1689 aa13.75□□□□□ -0.21
COL27A1-204ENST00000477421 USP35Q9P2H5 1018 aa13.75□□□□□ -0.21
COL27A1-204ENST00000477421 NLRP6P59044 892 aa13.75□□□□□ -0.21
COL27A1-204ENST00000477421 FOXD4L6Q3SYB3 417 aaPredicted RBP13.75□□□□□ -0.21
COL27A1-204ENST00000477421 FOXD4L3Q6VB84 417 aaPredicted RBP13.75□□□□□ -0.21
COL27A1-204ENST00000477421 ZNF428Q96B54 188 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 C14orf93Q9H972 538 aaKnown RBP13.74□□□□□ -0.21
COL27A1-204ENST00000477421 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.74□□□□□ -0.21
COL27A1-204ENST00000477421 TNNQ9UQP3 1299 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 PLEKHH1Q9ULM0 1364 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 WDR63Q8IWG1 891 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 RILPL2Q969X0 211 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 C22orf23Q9BZE7 217 aa13.74□□□□□ -0.21
COL27A1-204ENST00000477421 SSH1Q8WYL5 1049 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 EMILIN1Q9Y6C2 1016 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 HMMRO75330 724 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 IGHDP01880 384 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 FKBP5Q13451 457 aaPredicted RBP13.73□□□□□ -0.21
COL27A1-204ENST00000477421 ATF7IPQ6VMQ6 1270 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 TWISTNBQ3B726 338 aaPredicted RBP13.73□□□□□ -0.21
COL27A1-204ENST00000477421 NME9Q86XW9 330 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 CEP170Q5SW79 1584 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 ITSN2Q9NZM3 1697 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 TSPYL4Q9UJ04 414 aa13.73□□□□□ -0.21
COL27A1-204ENST00000477421 RPGRIP1LQ68CZ1 1315 aa13.72□□□□□ -0.21
COL27A1-204ENST00000477421 NAP1L2Q9ULW6 460 aaPredicted RBP13.72□□□□□ -0.21
COL27A1-204ENST00000477421 A2MP01023 1474 aa13.72□□□□□ -0.21
COL27A1-204ENST00000477421 MVPQ14764 893 aaKnown RBP13.72□□□□□ -0.21
COL27A1-204ENST00000477421 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL27A1-204ENST00000477421 DMRT2Q9Y5R5 561 aa13.72□□□□□ -0.21
COL27A1-204ENST00000477421 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
COL27A1-204ENST00000477421 TMEM57Q8N5G2 664 aa13.71□□□□□ -0.21
COL27A1-204ENST00000477421 NAP1L5Q96NT1 182 aaPredicted RBP13.71□□□□□ -0.21
COL27A1-204ENST00000477421 KDM5BQ9UGL1 1544 aa13.71□□□□□ -0.21
COL27A1-204ENST00000477421 FGD1P98174 961 aa13.71□□□□□ -0.21
COL27A1-204ENST00000477421 API5Q9BZZ5 524 aaKnown RBP13.71□□□□□ -0.21
COL27A1-204ENST00000477421 MIS18AQ9NYP9 233 aa13.71□□□□□ -0.21
COL27A1-204ENST00000477421 RBM33Q96EV2 1170 aaKnown RBP13.71□□□□□ -0.22
COL27A1-204ENST00000477421 GBP4Q96PP9 640 aa13.7□□□□□ -0.22
COL27A1-204ENST00000477421 CEBPAP49715 358 aaPredicted RBP13.7□□□□□ -0.22
COL27A1-204ENST00000477421 CCDC9Q9Y3X0 531 aaKnown RBP13.69□□□□□ -0.22
COL27A1-204ENST00000477421 ASXL2Q76L83 1435 aa13.69□□□□□ -0.22
COL27A1-204ENST00000477421 NUDT16Q96DE0 195 aaKnown RBP13.69□□□□□ -0.22
COL27A1-204ENST00000477421 RTEL1-TNFRSF6BF6WH68 1400 aa13.69□□□□□ -0.22
COL27A1-204ENST00000477421 MCCP23508 829 aa13.69□□□□□ -0.22
COL27A1-204ENST00000477421 ADGRL2O95490 1459 aa13.69□□□□□ -0.22
COL27A1-204ENST00000477421 TEFQ10587 303 aa13.68□□□□□ -0.22
COL27A1-204ENST00000477421 KIAA1211Q6ZU35 1233 aa13.68□□□□□ -0.22
COL27A1-204ENST00000477421 GOLGA6L3A6NEY3 463 aa13.68□□□□□ -0.22
COL27A1-204ENST00000477421 L1TD1Q5T7N2 865 aaKnown RBP13.68□□□□□ -0.22
COL27A1-204ENST00000477421 CCDC61Q9Y6R9 512 aa13.68□□□□□ -0.22
COL27A1-204ENST00000477421 PSME1Q06323 249 aa13.67□□□□□ -0.22
COL27A1-204ENST00000477421 NKTRP30414 1462 aaKnown RBP13.67□□□□□ -0.22
COL27A1-204ENST00000477421 DUOX2Q9NRD8 1548 aa13.67□□□□□ -0.22
COL27A1-204ENST00000477421 UHRF1BP1Q6BDS2 1440 aa13.67□□□□□ -0.22
COL27A1-204ENST00000477421 DENND4BO75064 1496 aaPredicted RBP13.67□□□□□ -0.22
COL27A1-204ENST00000477421 ABTB2Q8N961 1025 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 MCM10Q7L590 875 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 CHMP3Q9Y3E7 222 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 MBD5Q9P267 1494 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 LRPPRCP42704 1394 aaKnown RBP13.66□□□□□ -0.22
COL27A1-204ENST00000477421 ATAD2Q6PL18 1390 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 FYB1O15117 783 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 SLC4A2P04920 1241 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 TRIM27P14373 513 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 PCDHB15Q9Y5E8 787 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 SHANK2Q9UPX8 1470 aa13.66□□□□□ -0.22
COL27A1-204ENST00000477421 FCHSD2O94868 740 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 IL27Q8NEV9 243 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 FAM83GA6ND36 823 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 RLBP1P12271 317 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms