RNA–Protein interactions for RNA: ENST00000470661.1

PTP4A1-202, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 2

Gene PTP4A1, Length 479 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-202ENST00000470661 HLA-CQ95604 372 aa12.05□□□□□ -0.48
PTP4A1-202ENST00000470661 MRC2Q9UBG0 1479 aa12.05□□□□□ -0.48
PTP4A1-202ENST00000470661 MORN1Q5T089 497 aa12.04□□□□□ -0.48
PTP4A1-202ENST00000470661 CEP164Q9UPV0 1460 aa12.03□□□□□ -0.48
PTP4A1-202ENST00000470661 TLL1O43897 1013 aa12.03□□□□□ -0.48
PTP4A1-202ENST00000470661 BRPF1P55201 1214 aaPredicted RBP12.03□□□□□ -0.48
PTP4A1-202ENST00000470661 SPIRE2Q8WWL2 714 aa12.03□□□□□ -0.48
PTP4A1-202ENST00000470661 HOXA2O43364 376 aa12.02□□□□□ -0.49
PTP4A1-202ENST00000470661 ZPR1O75312 459 aa12.02□□□□□ -0.49
PTP4A1-202ENST00000470661 NR1I2O75469 434 aa12.02□□□□□ -0.49
PTP4A1-202ENST00000470661 NKX2-3Q8TAU0 364 aa12.02□□□□□ -0.49
PTP4A1-202ENST00000470661 GUCA2AQ02747 115 aa12.01□□□□□ -0.49
PTP4A1-202ENST00000470661 SCUBE3Q8IX30 993 aa12.01□□□□□ -0.49
PTP4A1-202ENST00000470661 SLC27A5Q9Y2P5 690 aa12.01□□□□□ -0.49
PTP4A1-202ENST00000470661 USP46P62068 366 aa12□□□□□ -0.49
PTP4A1-202ENST00000470661 GRIPAP1Q4V328 841 aa12□□□□□ -0.49
PTP4A1-202ENST00000470661 TBC1D2Q9BYX2 928 aa12□□□□□ -0.49
PTP4A1-202ENST00000470661 FAM117AQ9C073 453 aa12□□□□□ -0.49
PTP4A1-202ENST00000470661 URB2Q14146 1524 aaKnown RBP12□□□□□ -0.49
PTP4A1-202ENST00000470661 NDUFV2P19404 249 aa11.98□□□□□ -0.49
PTP4A1-202ENST00000470661 WDR62O43379 1518 aa11.97□□□□□ -0.49
PTP4A1-202ENST00000470661 MOXD2PA6NHM9 499 aa11.97□□□□□ -0.49
PTP4A1-202ENST00000470661 IFFO2Q5TF58 517 aa11.97□□□□□ -0.49
PTP4A1-202ENST00000470661 RNF19BQ6ZMZ0 732 aa11.95□□□□□ -0.5
PTP4A1-202ENST00000470661 THAP11Q96EK4 314 aa11.94□□□□□ -0.5
PTP4A1-202ENST00000470661 PLEKHG3A1L390 1219 aa11.93□□□□□ -0.5
PTP4A1-202ENST00000470661 FDX1P10109 184 aa11.93□□□□□ -0.5
PTP4A1-202ENST00000470661 A0A0G2JS52 829 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 ADH1BP00325 375 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 MYSM1Q5VVJ2 828 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 DDRGK1Q96HY6 314 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 SPSB2Q99619 263 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 PCDHGC3Q9UN70 934 aa11.92□□□□□ -0.5
PTP4A1-202ENST00000470661 FMNL1O95466 1100 aaPredicted RBP11.91□□□□□ -0.5
PTP4A1-202ENST00000470661 DIXDC1Q155Q3 683 aa11.91□□□□□ -0.5
PTP4A1-202ENST00000470661 BRICD5Q6PL45 260 aa11.91□□□□□ -0.5
PTP4A1-202ENST00000470661 SYMPKQ92797 1274 aaKnown RBP11.91□□□□□ -0.5
PTP4A1-202ENST00000470661 Q3C1V9 767 aa11.9□□□□□ -0.5
PTP4A1-202ENST00000470661 RSBN1LQ6PCB5 846 aaPredicted RBP11.9□□□□□ -0.5
PTP4A1-202ENST00000470661 IL27Q8NEV9 243 aa11.9□□□□□ -0.5
PTP4A1-202ENST00000470661 S1PR4O95977 384 aa11.89□□□□□ -0.51
PTP4A1-202ENST00000470661 RIC3Q7Z5B4 369 aa11.89□□□□□ -0.51
PTP4A1-202ENST00000470661 CSPP1Q1MSJ5 1256 aa11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 PPP1R18Q6NYC8 613 aa11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 POLR3EQ9NVU0 708 aa11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 LIMD1Q9UGP4 676 aa11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 SALL2Q9Y467 1007 aaPredicted RBP11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 PCDHB15Q9Y5E8 787 aa11.88□□□□□ -0.51
PTP4A1-202ENST00000470661 ZNF608Q9ULD9 1512 aaPredicted RBP11.87□□□□□ -0.51
PTP4A1-202ENST00000470661 SPTLC1O15269 473 aa11.87□□□□□ -0.51
PTP4A1-202ENST00000470661 FAM160A2Q8N612 972 aaPredicted RBP11.87□□□□□ -0.51
PTP4A1-202ENST00000470661 PRDM9Q9NQV7 894 aa11.87□□□□□ -0.51
PTP4A1-202ENST00000470661 TOPBP1Q92547 1522 aa11.86□□□□□ -0.51
PTP4A1-202ENST00000470661 C6orf229H3BNL8 230 aa11.86□□□□□ -0.51
PTP4A1-202ENST00000470661 SLC6A16Q9GZN6 736 aa11.86□□□□□ -0.51
PTP4A1-202ENST00000470661 RSPH6AQ9H0K4 717 aa11.86□□□□□ -0.51
PTP4A1-202ENST00000470661 PRDM2Q13029 1718 aa11.84□□□□□ -0.51
PTP4A1-202ENST00000470661 CLK2P49760 499 aaKnown RBP11.84□□□□□ -0.51
PTP4A1-202ENST00000470661 USB1Q9BQ65 265 aaKnown RBP11.84□□□□□ -0.51
PTP4A1-202ENST00000470661 PPEF1O14829 653 aaPredicted RBP11.83□□□□□ -0.52
PTP4A1-202ENST00000470661 GJA5P36382 358 aa11.83□□□□□ -0.52
PTP4A1-202ENST00000470661 CABLES1Q8TDN4 633 aa11.83□□□□□ -0.52
PTP4A1-202ENST00000470661 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.83□□□□□ -0.52
PTP4A1-202ENST00000470661 GGCXP38435 758 aa11.82□□□□□ -0.52
PTP4A1-202ENST00000470661 SH3D19Q5HYK7 790 aa11.82□□□□□ -0.52
PTP4A1-202ENST00000470661 RAD54L2Q9Y4B4 1467 aa11.82□□□□□ -0.52
PTP4A1-202ENST00000470661 RNF223E7ERA6 249 aa11.81□□□□□ -0.52
PTP4A1-202ENST00000470661 QPCTQ16769 361 aa11.81□□□□□ -0.52
PTP4A1-202ENST00000470661 MSS51Q4VC12 460 aa11.81□□□□□ -0.52
PTP4A1-202ENST00000470661 AQRO60306 1485 aaKnown RBP eCLIP11.81□□□□□ -0.526e-12■■■■■ 54.5
PTP4A1-202ENST00000470661 MTMR2Q13614 643 aa11.8□□□□□ -0.52
PTP4A1-202ENST00000470661 RETREG3Q86VR2 466 aa11.8□□□□□ -0.52
PTP4A1-202ENST00000470661 PROCA1Q8NCQ7 364 aaPredicted RBP11.8□□□□□ -0.52
PTP4A1-202ENST00000470661 ATP1B4Q9UN42 357 aaPredicted RBP11.8□□□□□ -0.52
PTP4A1-202ENST00000470661 SKIV2LQ15477 1246 aaKnown RBP11.79□□□□□ -0.52
PTP4A1-202ENST00000470661 HRCP23327 699 aa11.78□□□□□ -0.52
PTP4A1-202ENST00000470661 ZBTB3Q9H5J0 574 aa11.78□□□□□ -0.52
PTP4A1-202ENST00000470661 DNMBPQ6XZF7 1577 aa11.78□□□□□ -0.52
PTP4A1-202ENST00000470661 TDRD9Q8NDG6 1382 aaKnown RBP11.78□□□□□ -0.52
PTP4A1-202ENST00000470661 IFT140Q96RY7 1462 aa11.77□□□□□ -0.52
PTP4A1-202ENST00000470661 PRR7Q8TB68 274 aa11.77□□□□□ -0.53
PTP4A1-202ENST00000470661 CUX1P39880 1505 aa11.76□□□□□ -0.53
PTP4A1-202ENST00000470661 CFAP99D6REC4 459 aa11.76□□□□□ -0.53
PTP4A1-202ENST00000470661 POLA1P09884 1462 aaPredicted RBP11.76□□□□□ -0.53
PTP4A1-202ENST00000470661 NUTM2BA6NNL0 878 aaPredicted RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 NUTM2EB1AL46 878 aaPredicted RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 LILRB3O75022 631 aa11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 DXOO77932 396 aaKnown RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 TUSC1Q2TAM9 212 aa11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 NUTM2DQ5VT03 806 aaPredicted RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 PRPF38BQ5VTL8 546 aaKnown RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 FBXO31Q5XUX0 539 aaPredicted RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 FCF1Q9Y324 198 aaKnown RBP11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 SOGA1O94964 1423 aa11.75□□□□□ -0.53
PTP4A1-202ENST00000470661 SPDYE5A6NIY4 337 aa11.74□□□□□ -0.53
PTP4A1-202ENST00000470661 JUNDP17535 347 aa11.74□□□□□ -0.53
PTP4A1-202ENST00000470661 MMP16P51512 607 aa11.74□□□□□ -0.53
PTP4A1-202ENST00000470661 RTL5Q5HYW3 569 aaPredicted RBP11.74□□□□□ -0.53
PTP4A1-202ENST00000470661 ANKLE1Q8NAG6 615 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms