RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 ATP1B4Q9UN42 357 aaPredicted RBP8.85□□□□□ -0.99
CLK1-208ENST00000464454 SPDYE5A6NIY4 337 aa8.84□□□□□ -0.99
CLK1-208ENST00000464454 GUCA2AQ02747 115 aa8.84□□□□□ -0.99
CLK1-208ENST00000464454 PRPF38BQ5VTL8 546 aaKnown RBP8.84□□□□□ -0.99
CLK1-208ENST00000464454 HLA-CQ95604 372 aa8.84□□□□□ -0.99
CLK1-208ENST00000464454 ZBTB3Q9H5J0 574 aa8.84□□□□□ -0.99
CLK1-208ENST00000464454 LIMD1Q9UGP4 676 aa8.83□□□□□ -1
CLK1-208ENST00000464454 C6orf229H3BNL8 230 aa8.82□□□□□ -1
CLK1-208ENST00000464454 ADH1BP00325 375 aa8.82□□□□□ -1
CLK1-208ENST00000464454 MTMR2Q13614 643 aa8.82□□□□□ -1
CLK1-208ENST00000464454 BRICD5Q6PL45 260 aa8.82□□□□□ -1
CLK1-208ENST00000464454 ZNF516Q92618 1163 aa8.82□□□□□ -1
CLK1-208ENST00000464454 SPSB2Q99619 263 aa8.82□□□□□ -1
CLK1-208ENST00000464454 PCDHGC3Q9UN70 934 aa8.82□□□□□ -1
CLK1-208ENST00000464454 CSPP1Q1MSJ5 1256 aa8.81□□□□□ -1
CLK1-208ENST00000464454 RETREG3Q86VR2 466 aa8.81□□□□□ -1
CLK1-208ENST00000464454 THAP11Q96EK4 314 aa8.81□□□□□ -1
CLK1-208ENST00000464454 RNF19BQ6ZMZ0 732 aa8.8□□□□□ -1
CLK1-208ENST00000464454 USB1Q9BQ65 265 aaKnown RBP8.8□□□□□ -1
CLK1-208ENST00000464454 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.8□□□□□ -1
CLK1-208ENST00000464454 PCDHB15Q9Y5E8 787 aa8.8□□□□□ -1
CLK1-208ENST00000464454 NUTM2BA6NNL0 878 aaPredicted RBP8.79□□□□□ -1
CLK1-208ENST00000464454 NUTM2EB1AL46 878 aaPredicted RBP8.79□□□□□ -1
CLK1-208ENST00000464454 TLL1O43897 1013 aa8.79□□□□□ -1
CLK1-208ENST00000464454 MSS51Q4VC12 460 aa8.79□□□□□ -1
CLK1-208ENST00000464454 NUTM2DQ5VT03 806 aaPredicted RBP8.79□□□□□ -1
CLK1-208ENST00000464454 NUTM2AQ8IVF1 878 aaPredicted RBP8.79□□□□□ -1
CLK1-208ENST00000464454 LILRB3O75022 631 aa8.78□□□□□ -1
CLK1-208ENST00000464454 HRCP23327 699 aa8.78□□□□□ -1
CLK1-208ENST00000464454 GGCXP38435 758 aa8.78□□□□□ -1
CLK1-208ENST00000464454 PROCA1Q8NCQ7 364 aaPredicted RBP8.78□□□□□ -1
CLK1-208ENST00000464454 SLC6A16Q9GZN6 736 aa8.77□□□□□ -1.01
CLK1-208ENST00000464454 QPCTQ16769 361 aa8.76□□□□□ -1.01
CLK1-208ENST00000464454 PPP2R2DQ66LE6 453 aa8.76□□□□□ -1.01
CLK1-208ENST00000464454 CABLES1Q8TDN4 633 aa8.76□□□□□ -1.01
CLK1-208ENST00000464454 SYMPKQ92797 1274 aaKnown RBP8.76□□□□□ -1.01
CLK1-208ENST00000464454 DESI1Q6ICB0 168 aa8.75□□□□□ -1.01
CLK1-208ENST00000464454 NKX2-3Q8TAU0 364 aa8.75□□□□□ -1.01
CLK1-208ENST00000464454 PRR7Q8TB68 274 aa8.75□□□□□ -1.01
CLK1-208ENST00000464454 HELBQ8NG08 1087 aaPredicted RBP8.74□□□□□ -1.01
CLK1-208ENST00000464454 JUNDP17535 347 aa8.73□□□□□ -1.01
CLK1-208ENST00000464454 FAM160A2Q8N612 972 aaPredicted RBP8.73□□□□□ -1.01
CLK1-208ENST00000464454 S1PR4O95977 384 aa8.72□□□□□ -1.01
CLK1-208ENST00000464454 MMP16P51512 607 aa8.72□□□□□ -1.01
CLK1-208ENST00000464454 RTL5Q5HYW3 569 aaPredicted RBP8.72□□□□□ -1.01
CLK1-208ENST00000464454 CFAP99D6REC4 459 aa8.71□□□□□ -1.02
CLK1-208ENST00000464454 DXOO77932 396 aaKnown RBP8.71□□□□□ -1.02
CLK1-208ENST00000464454 RFC5P40937 340 aa8.71□□□□□ -1.02
CLK1-208ENST00000464454 TMEM259Q4ZIN3 620 aa8.71□□□□□ -1.02
CLK1-208ENST00000464454 TSC1Q92574 1164 aa8.71□□□□□ -1.02
CLK1-208ENST00000464454 PPP1R18Q6NYC8 613 aa8.7□□□□□ -1.02
CLK1-208ENST00000464454 PRDM9Q9NQV7 894 aa8.7□□□□□ -1.02
CLK1-208ENST00000464454 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.7□□□□□ -1.02
CLK1-208ENST00000464454 LAPTM4AQ15012 233 aa8.69□□□□□ -1.02
CLK1-208ENST00000464454 PTPRNQ16849 979 aa8.68□□□□□ -1.02
CLK1-208ENST00000464454 ANKLE1Q8NAG6 615 aa8.68□□□□□ -1.02
CLK1-208ENST00000464454 RNF223E7ERA6 249 aa8.67□□□□□ -1.02
CLK1-208ENST00000464454 AP1G2O75843 785 aa8.67□□□□□ -1.02
CLK1-208ENST00000464454 CCNYL3P0C7X3 344 aa8.66□□□□□ -1.02
CLK1-208ENST00000464454 FBXO31Q5XUX0 539 aaPredicted RBP8.66□□□□□ -1.02
CLK1-208ENST00000464454 LYPD8Q6UX82 237 aa8.66□□□□□ -1.02
CLK1-208ENST00000464454 BANK1Q8NDB2 785 aa8.66□□□□□ -1.02
CLK1-208ENST00000464454 NUDT12Q9BQG2 462 aa8.66□□□□□ -1.02
CLK1-208ENST00000464454 FCF1Q9Y324 198 aaKnown RBP8.66□□□□□ -1.02
CLK1-208ENST00000464454 APBB1O00213 710 aa8.63□□□□□ -1.03
CLK1-208ENST00000464454 USP17L8P0C7I0 530 aa8.63□□□□□ -1.03
CLK1-208ENST00000464454 CTDSPL2Q05D32 466 aa8.63□□□□□ -1.03
CLK1-208ENST00000464454 CCDC24Q8N4L8 307 aa8.63□□□□□ -1.03
CLK1-208ENST00000464454 SOCS7O14512 581 aa8.62□□□□□ -1.03
CLK1-208ENST00000464454 PPEF1O14829 653 aaPredicted RBP8.62□□□□□ -1.03
CLK1-208ENST00000464454 EVA1BQ9NVM1 165 aa8.62□□□□□ -1.03
CLK1-208ENST00000464454 ZBTB24O43167 697 aaPredicted RBP8.61□□□□□ -1.03
CLK1-208ENST00000464454 Q6ZNB5 142 aa8.61□□□□□ -1.03
CLK1-208ENST00000464454 PER1O15534 1290 aaPredicted RBP8.6□□□□□ -1.03
CLK1-208ENST00000464454 CTHP32929 405 aa8.6□□□□□ -1.03
CLK1-208ENST00000464454 KCNH2Q12809 1159 aa8.6□□□□□ -1.03
CLK1-208ENST00000464454 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
CLK1-208ENST00000464454 RPIAP49247 311 aa8.59□□□□□ -1.03
CLK1-208ENST00000464454 FLIIQ13045 1269 aa8.59□□□□□ -1.03
CLK1-208ENST00000464454 PNMA1Q8ND90 353 aa8.59□□□□□ -1.03
CLK1-208ENST00000464454 ARMC2Q8NEN0 867 aa8.58□□□□□ -1.04
CLK1-208ENST00000464454 LRRN4Q8WUT4 740 aa8.58□□□□□ -1.04
CLK1-208ENST00000464454 GTF3C3Q9Y5Q9 886 aa8.58□□□□□ -1.04
CLK1-208ENST00000464454 UNC93B1Q9H1C4 597 aa8.57□□□□□ -1.04
CLK1-208ENST00000464454 PRM3Q9NNZ6 103 aa8.57□□□□□ -1.04
CLK1-208ENST00000464454 V9GY48 417 aaPredicted RBP8.57□□□□□ -1.04
CLK1-208ENST00000464454 SLC19A1P41440 591 aa8.56□□□□□ -1.04
CLK1-208ENST00000464454 PLA2G2CQ5R387 149 aa8.56□□□□□ -1.04
CLK1-208ENST00000464454 MAP10Q9P2G4 905 aa8.56□□□□□ -1.04
CLK1-208ENST00000464454 CD2BP2O95400 341 aaKnown RBP8.55□□□□□ -1.04
CLK1-208ENST00000464454 MCM6Q14566 821 aa8.55□□□□□ -1.04
CLK1-208ENST00000464454 PRKD2Q9BZL6 878 aa8.55□□□□□ -1.04
CLK1-208ENST00000464454 TRIM32Q13049 653 aa8.54□□□□□ -1.04
CLK1-208ENST00000464454 NBPF14Q5TI25 921 aa8.54□□□□□ -1.04
CLK1-208ENST00000464454 MTMR14Q8NCE2 650 aa8.54□□□□□ -1.04
CLK1-208ENST00000464454 GPKOWQ92917 476 aaPredicted RBP eCLIP8.54□□□□□ -1.04
CLK1-208ENST00000464454 HMX1Q9NP08 348 aaPredicted RBP8.54□□□□□ -1.04
CLK1-208ENST00000464454 ZC3H4Q9UPT8 1303 aaKnown RBP8.54□□□□□ -1.04
CLK1-208ENST00000464454 NR6A1Q15406 480 aa8.53□□□□□ -1.04
CLK1-208ENST00000464454 PTCRAQ6ISU1 281 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms