RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PROCA1Q8NCQ7 364 aaPredicted RBP9.22□□□□□ -0.93
VPS54-204ENST00000416400 HLA-CQ95604 372 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 MTRQ99707 1265 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 ZBTB3Q9H5J0 574 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 IL21Q9HBE4 155 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 LIMD1Q9UGP4 676 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 PRPF38BQ5VTL8 546 aaKnown RBP9.21□□□□□ -0.94
VPS54-204ENST00000416400 SPDYE5A6NIY4 337 aa9.2□□□□□ -0.94
VPS54-204ENST00000416400 MTMR2Q13614 643 aa9.2□□□□□ -0.94
VPS54-204ENST00000416400 PCDHB15Q9Y5E8 787 aa9.19□□□□□ -0.94
VPS54-204ENST00000416400 ZPR1O75312 459 aa9.18□□□□□ -0.94
VPS54-204ENST00000416400 KCNC4Q03721 635 aa9.18□□□□□ -0.94
VPS54-204ENST00000416400 PCDHGC3Q9UN70 934 aa9.18□□□□□ -0.94
VPS54-204ENST00000416400 SALL2Q9Y467 1007 aaPredicted RBP9.18□□□□□ -0.94
VPS54-204ENST00000416400 HRCP23327 699 aa9.17□□□□□ -0.94
VPS54-204ENST00000416400 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS54-204ENST00000416400 LILRB3O75022 631 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 QPCTQ16769 361 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 TJAP1Q5JTD0 557 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 BRICD5Q6PL45 260 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 RETREG3Q86VR2 466 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 CABLES1Q8TDN4 633 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 TSC1Q92574 1164 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 SPSB2Q99619 263 aa9.16□□□□□ -0.94
VPS54-204ENST00000416400 USB1Q9BQ65 265 aaKnown RBP9.16□□□□□ -0.94
VPS54-204ENST00000416400 SYMPKQ92797 1274 aaKnown RBP9.15□□□□□ -0.94
VPS54-204ENST00000416400 RNF19BQ6ZMZ0 732 aa9.14□□□□□ -0.95
VPS54-204ENST00000416400 HELBQ8NG08 1087 aaPredicted RBP9.14□□□□□ -0.95
VPS54-204ENST00000416400 ZNF516Q92618 1163 aa9.14□□□□□ -0.95
VPS54-204ENST00000416400 ADH1BP00325 375 aa9.13□□□□□ -0.95
VPS54-204ENST00000416400 TMEM259Q4ZIN3 620 aa9.13□□□□□ -0.95
VPS54-204ENST00000416400 PPP2R2DQ66LE6 453 aa9.13□□□□□ -0.95
VPS54-204ENST00000416400 PRR7Q8TB68 274 aa9.13□□□□□ -0.95
VPS54-204ENST00000416400 RFC5P40937 340 aa9.12□□□□□ -0.95
VPS54-204ENST00000416400 RTL5Q5HYW3 569 aaPredicted RBP9.12□□□□□ -0.95
VPS54-204ENST00000416400 THAP11Q96EK4 314 aa9.12□□□□□ -0.95
VPS54-204ENST00000416400 TLL1O43897 1013 aa9.11□□□□□ -0.95
VPS54-204ENST00000416400 AP1G2O75843 785 aa9.11□□□□□ -0.95
VPS54-204ENST00000416400 ITGBL1O95965 494 aaPredicted RBP9.11□□□□□ -0.95
VPS54-204ENST00000416400 GGCXP38435 758 aa9.11□□□□□ -0.95
VPS54-204ENST00000416400 SLC6A16Q9GZN6 736 aa9.11□□□□□ -0.95
VPS54-204ENST00000416400 MSS51Q4VC12 460 aa9.09□□□□□ -0.95
VPS54-204ENST00000416400 CFAP99D6REC4 459 aa9.08□□□□□ -0.96
VPS54-204ENST00000416400 NKX2-3Q8TAU0 364 aa9.08□□□□□ -0.96
VPS54-204ENST00000416400 JUNDP17535 347 aa9.07□□□□□ -0.96
VPS54-204ENST00000416400 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
VPS54-204ENST00000416400 BANK1Q8NDB2 785 aa9.07□□□□□ -0.96
VPS54-204ENST00000416400 APBB1O00213 710 aa9.06□□□□□ -0.96
VPS54-204ENST00000416400 FLIIQ13045 1269 aa9.06□□□□□ -0.96
VPS54-204ENST00000416400 FAM160A2Q8N612 972 aaPredicted RBP9.06□□□□□ -0.96
VPS54-204ENST00000416400 ARXQ96QS3 562 aa9.06□□□□□ -0.96
VPS54-204ENST00000416400 PLA2G2EQ9NZK7 142 aa9.06□□□□□ -0.96
VPS54-204ENST00000416400 SUPT5HO00267 1087 aaKnown RBP9.05□□□□□ -0.96
VPS54-204ENST00000416400 S1PR4O95977 384 aa9.05□□□□□ -0.96
VPS54-204ENST00000416400 USP17L8P0C7I0 530 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 MMP16P51512 607 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 CTDSPL2Q05D32 466 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 FBXO31Q5XUX0 539 aaPredicted RBP9.03□□□□□ -0.96
VPS54-204ENST00000416400 CCDC24Q8N4L8 307 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 ZMYND15Q9H091 742 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 PRM3Q9NNZ6 103 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 PRDM9Q9NQV7 894 aa9.03□□□□□ -0.96
VPS54-204ENST00000416400 DXOO77932 396 aaKnown RBP9.02□□□□□ -0.97
VPS54-204ENST00000416400 PTPRNQ16849 979 aa9.02□□□□□ -0.97
VPS54-204ENST00000416400 LYPD8Q6UX82 237 aa9.02□□□□□ -0.97
VPS54-204ENST00000416400 CTHP32929 405 aa9.01□□□□□ -0.97
VPS54-204ENST00000416400 IFFO2Q5TF58 517 aa9.01□□□□□ -0.97
VPS54-204ENST00000416400 PNMA1Q8ND90 353 aa9.01□□□□□ -0.97
VPS54-204ENST00000416400 NUDT12Q9BQG2 462 aa9.01□□□□□ -0.97
VPS54-204ENST00000416400 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.01□□□□□ -0.97
VPS54-204ENST00000416400 CCNYL3P0C7X3 344 aa9□□□□□ -0.97
VPS54-204ENST00000416400 PPP1R18Q6NYC8 613 aa8.99□□□□□ -0.97
VPS54-204ENST00000416400 FCF1Q9Y324 198 aaKnown RBP8.99□□□□□ -0.97
VPS54-204ENST00000416400 ZBTB24O43167 697 aaPredicted RBP8.98□□□□□ -0.97
VPS54-204ENST00000416400 LRRN4Q8WUT4 740 aa8.98□□□□□ -0.97
VPS54-204ENST00000416400 PER1O15534 1290 aaPredicted RBP8.97□□□□□ -0.97
VPS54-204ENST00000416400 RAD21O60216 631 aa8.97□□□□□ -0.97
VPS54-204ENST00000416400 ANKLE1Q8NAG6 615 aa8.97□□□□□ -0.97
VPS54-204ENST00000416400 SNRKQ9NRH2 765 aa8.97□□□□□ -0.97
VPS54-204ENST00000416400 RNF223E7ERA6 249 aa8.96□□□□□ -0.98
VPS54-204ENST00000416400 PPEF1O14829 653 aaPredicted RBP8.96□□□□□ -0.98
VPS54-204ENST00000416400 UBTFP17480 764 aaKnown RBP8.96□□□□□ -0.98
VPS54-204ENST00000416400 MCM6Q14566 821 aa8.96□□□□□ -0.98
VPS54-204ENST00000416400 EVA1BQ9NVM1 165 aa8.96□□□□□ -0.98
VPS54-204ENST00000416400 KCNH2Q12809 1159 aa8.95□□□□□ -0.98
VPS54-204ENST00000416400 HOMEZQ8IX15 550 aa8.95□□□□□ -0.98
VPS54-204ENST00000416400 ARMC2Q8NEN0 867 aa8.95□□□□□ -0.98
VPS54-204ENST00000416400 SOCS7O14512 581 aa8.94□□□□□ -0.98
VPS54-204ENST00000416400 A0A0G2JS52 829 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 NR6A1Q15406 480 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 WWC1Q8IX03 1113 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 MTMR14Q8NCE2 650 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 MAP10Q9P2G4 905 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 NDUFB9Q9Y6M9 179 aa8.93□□□□□ -0.98
VPS54-204ENST00000416400 F12P00748 615 aaPredicted RBP8.91□□□□□ -0.98
VPS54-204ENST00000416400 UNC93B1Q9H1C4 597 aa8.91□□□□□ -0.98
VPS54-204ENST00000416400 HMX1Q9NP08 348 aaPredicted RBP8.91□□□□□ -0.98
VPS54-204ENST00000416400 CD2BP2O95400 341 aaKnown RBP8.9□□□□□ -0.98
VPS54-204ENST00000416400 NBPF14Q5TI25 921 aa8.9□□□□□ -0.98
VPS54-204ENST00000416400 RPIAP49247 311 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms