RNA–Protein interactions for RNA: ENST00000372276.7

CD40-201, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-201ENST00000372276 NSD3Q9BZ95 1437 aa23.7■■□□□ 1.38
CD40-201ENST00000372276 ARHGEF28Q8N1W1 1705 aaKnown RBP23.7■■□□□ 1.38
CD40-201ENST00000372276 E9PSI1 815 aa23.7■■□□□ 1.38
CD40-201ENST00000372276 MORC1Q86VD1 984 aa23.7■■□□□ 1.38
CD40-201ENST00000372276 PREX1Q8TCU6 1659 aa23.69■■□□□ 1.38
CD40-201ENST00000372276 IDI1Q13907 227 aa23.68■■□□□ 1.38
CD40-201ENST00000372276 ARHGEF40Q8TER5 1519 aa23.67■■□□□ 1.38
CD40-201ENST00000372276 AGLP35573 1532 aa23.67■■□□□ 1.38
CD40-201ENST00000372276 ANKRD36BQ8N2N9 1353 aa23.67■■□□□ 1.38
CD40-201ENST00000372276 CFAP53Q96M91 514 aa23.66■■□□□ 1.38
CD40-201ENST00000372276 YEATS2Q9ULM3 1422 aa23.66■■□□□ 1.38
CD40-201ENST00000372276 TMEM131LA2VDJ0 1609 aa23.65■■□□□ 1.38
CD40-201ENST00000372276 NKTRP30414 1462 aaKnown RBP23.64■■□□□ 1.38
CD40-201ENST00000372276 TMEM132EQ6IEE7 984 aa23.64■■□□□ 1.38
CD40-201ENST00000372276 MSH5O43196 834 aa23.62■■□□□ 1.37
CD40-201ENST00000372276 ANP32AP39687 249 aaKnown RBP23.62■■□□□ 1.37
CD40-201ENST00000372276 SLC12A5Q9H2X9 1139 aa23.62■■□□□ 1.37
CD40-201ENST00000372276 APAF1O14727 1248 aa23.62■■□□□ 1.37
CD40-201ENST00000372276 ATAD2Q6PL18 1390 aa23.6■■□□□ 1.37
CD40-201ENST00000372276 CRBNQ96SW2 442 aa23.6■■□□□ 1.37
CD40-201ENST00000372276 TULP4Q9NRJ4 1543 aa23.6■■□□□ 1.37
CD40-201ENST00000372276 RUNDC1Q96C34 613 aa23.59■■□□□ 1.37
CD40-201ENST00000372276 CCDC146Q8IYE0 955 aa23.57■■□□□ 1.36
CD40-201ENST00000372276 SHPRHQ149N8 1683 aa23.56■■□□□ 1.36
CD40-201ENST00000372276 PLIN1O60240 522 aa23.55■■□□□ 1.36
CD40-201ENST00000372276 CCDC27Q2M243 656 aa23.55■■□□□ 1.36
CD40-201ENST00000372276 CENPQQ7L2Z9 268 aaPredicted RBP23.55■■□□□ 1.36
CD40-201ENST00000372276 WDR63Q8IWG1 891 aa23.55■■□□□ 1.36
CD40-201ENST00000372276 CLTCQ00610 1675 aaKnown RBP23.54■■□□□ 1.36
CD40-201ENST00000372276 MED14O60244 1454 aa23.54■■□□□ 1.36
CD40-201ENST00000372276 TERF2IPQ9NYB0 399 aa23.54■■□□□ 1.36
CD40-201ENST00000372276 MYO5BQ9ULV0 1848 aa23.54■■□□□ 1.36
CD40-201ENST00000372276 AAMPQ13685 434 aa23.53■■□□□ 1.36
CD40-201ENST00000372276 YTHDC2Q9H6S0 1430 aaKnown RBP23.52■■□□□ 1.36
CD40-201ENST00000372276 ABCC11Q96J66 1382 aa23.52■■□□□ 1.36
CD40-201ENST00000372276 WWC1Q8IX03 1113 aa23.51■■□□□ 1.35
CD40-201ENST00000372276 PTPRMP28827 1452 aa23.51■■□□□ 1.35
CD40-201ENST00000372276 PDE3AQ14432 1141 aa23.51■■□□□ 1.35
CD40-201ENST00000372276 IPO9Q96P70 1041 aaKnown RBP23.51■■□□□ 1.35
CD40-201ENST00000372276 DLC1Q96QB1 1528 aa23.5■■□□□ 1.35
CD40-201ENST00000372276 MTHFSP49914 203 aa23.49■■□□□ 1.35
CD40-201ENST00000372276 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
CD40-201ENST00000372276 NOP58Q9Y2X3 529 aaKnown RBP23.49■■□□□ 1.35
CD40-201ENST00000372276 POGKQ9P215 609 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 STAG3Q9UJ98 1225 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 SPATA31D1Q6ZQQ2 1576 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 ALKQ9UM73 1620 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 KDM4FA0A1W2PPD8 638 aa23.48■■□□□ 1.35
CD40-201ENST00000372276 KDM2BQ8NHM5 1336 aa23.47■■□□□ 1.35
CD40-201ENST00000372276 PDE4AP27815 886 aa23.47■■□□□ 1.35
CD40-201ENST00000372276 SRPK2P78362 688 aaKnown RBP23.47■■□□□ 1.35
CD40-201ENST00000372276 BACH2Q9BYV9 841 aa23.47■■□□□ 1.35
CD40-201ENST00000372276 NUTM2DQ5VT03 806 aaPredicted RBP23.46■■□□□ 1.35
CD40-201ENST00000372276 CABP2Q9NPB3 220 aa23.46■■□□□ 1.35
CD40-201ENST00000372276 ANKRD26Q9UPS8 1709 aa23.46■■□□□ 1.35
CD40-201ENST00000372276 PNNQ9H307 717 aaKnown RBP23.45■■□□□ 1.34
CD40-201ENST00000372276 HDGFL2Q7Z4V5 671 aaPredicted RBP23.44■■□□□ 1.34
CD40-201ENST00000372276 C20orf194Q5TEA3 1177 aa23.44■■□□□ 1.34
CD40-201ENST00000372276 TCP11L2Q8N4U5 519 aa23.44■■□□□ 1.34
CD40-201ENST00000372276 CT47B1P0C2W7 299 aaPredicted RBP23.43■■□□□ 1.34
CD40-201ENST00000372276 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.43■■□□□ 1.34
CD40-201ENST00000372276 MYH16Q9H6N6 1097 aa23.43■■□□□ 1.34
CD40-201ENST00000372276 A0A1W2PP64 1363 aa23.43■■□□□ 1.34
CD40-201ENST00000372276 PRAM1Q96QH2 718 aa23.42■■□□□ 1.34
CD40-201ENST00000372276 STK26Q9P289 416 aa23.42■■□□□ 1.34
CD40-201ENST00000372276 HDGFP51858 240 aaKnown RBP23.41■■□□□ 1.34
CD40-201ENST00000372276 SPINK5Q9NQ38 1064 aaPredicted RBP23.41■■□□□ 1.34
CD40-201ENST00000372276 ZBTB47Q9UFB7 747 aaPredicted RBP23.41■■□□□ 1.34
CD40-201ENST00000372276 A2ML1A8K2U0 1454 aa23.41■■□□□ 1.34
CD40-201ENST00000372276 TNNT2P45379 298 aaPredicted RBP23.4■■□□□ 1.34
CD40-201ENST00000372276 FBXO31Q5XUX0 539 aaPredicted RBP23.4■■□□□ 1.34
CD40-201ENST00000372276 ADAMTSL3P82987 1691 aa23.39■■□□□ 1.33
CD40-201ENST00000372276 ADGRB2O60241 1585 aa23.38■■□□□ 1.33
CD40-201ENST00000372276 RIMS2Q9UQ26 1411 aa23.37■■□□□ 1.33
CD40-201ENST00000372276 ATP7BP35670 1465 aa23.36■■□□□ 1.33
CD40-201ENST00000372276 U2AF1L5P0DN76 240 aaPredicted RBP23.36■■□□□ 1.33
CD40-201ENST00000372276 U2AF1Q01081 240 aaKnown RBP eCLIP23.36■■□□□ 1.33
CD40-201ENST00000372276 SIRT1Q96EB6 747 aa23.36■■□□□ 1.33
CD40-201ENST00000372276 MINK1Q8N4C8 1332 aaPredicted RBP23.35■■□□□ 1.33
CD40-201ENST00000372276 MLECQ14165 292 aa23.35■■□□□ 1.33
CD40-201ENST00000372276 CDK19Q9BWU1 502 aa23.35■■□□□ 1.33
CD40-201ENST00000372276 CANXP27824 592 aaKnown RBP23.34■■□□□ 1.33
CD40-201ENST00000372276 SAFB2Q14151 953 aaKnown RBP eCLIP23.34■■□□□ 1.33
CD40-201ENST00000372276 DDRGK1Q96HY6 314 aa23.34■■□□□ 1.33
CD40-201ENST00000372276 CD163L1Q9NR16 1453 aa23.34■■□□□ 1.33
CD40-201ENST00000372276 BCAR3O75815 825 aa23.33■■□□□ 1.33
CD40-201ENST00000372276 IL16Q14005 1332 aa23.33■■□□□ 1.33
CD40-201ENST00000372276 FYB1O15117 783 aa23.33■■□□□ 1.32
CD40-201ENST00000372276 ESF1Q9H501 851 aaKnown RBP23.33■■□□□ 1.32
CD40-201ENST00000372276 RARSP54136 660 aaKnown RBP23.32■■□□□ 1.32
CD40-201ENST00000372276 KIF20BQ96Q89 1820 aa23.32■■□□□ 1.32
CD40-201ENST00000372276 DMRT2Q9Y5R5 561 aa23.31■■□□□ 1.32
CD40-201ENST00000372276 PNPLA6Q8IY17 1366 aa23.31■■□□□ 1.32
CD40-201ENST00000372276 NLRP1Q9C000 1473 aa23.31■■□□□ 1.32
CD40-201ENST00000372276 COL3A1P02461 1466 aaPredicted RBP23.3■■□□□ 1.32
CD40-201ENST00000372276 SETD1AO15047 1707 aaKnown RBP23.3■■□□□ 1.32
CD40-201ENST00000372276 MAPK8IP3Q9UPT6 1336 aa23.29■■□□□ 1.32
CD40-201ENST00000372276 NEUROD2Q15784 382 aa23.28■■□□□ 1.32
CD40-201ENST00000372276 FAM161AQ3B820 660 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms