RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SART3Q15020 963 aaKnown RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 COG6Q9Y2V7 657 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 HIP1O00291 1037 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 CCP110O43303 1012 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 DHX8Q14562 1220 aaKnown RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 MNS1Q8NEH6 495 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 TSPYL4Q9UJ04 414 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 SLC3A2P08195 630 aaKnown RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 NAP1L1P55209 391 aaKnown RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 WWC2Q6AWC2 1192 aa7.8□□□□□ -1.16
UPF2-201ENST00000356352 PRKRIP1Q9H875 184 aaPredicted RBP7.8□□□□□ -1.16
UPF2-201ENST00000356352 PIP4K2AP48426 406 aaPredicted RBP7.79□□□□□ -1.16
UPF2-201ENST00000356352 BCL2L13Q9BXK5 485 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 MYOM3Q5VTT5 1437 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 ATF3P18847 181 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 HSP90B2PQ58FF3 399 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 VPS37CA5D8V6 355 aaPredicted RBP7.79□□□□□ -1.16
UPF2-201ENST00000356352 DCAF8L1A6NGE4 600 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 RIC3Q7Z5B4 369 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 CDC45O75419 566 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 CALRP27797 417 aaKnown RBP7.79□□□□□ -1.16
UPF2-201ENST00000356352 CNTROBQ8N137 903 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 SYTL4Q96C24 671 aaPredicted RBP7.79□□□□□ -1.16
UPF2-201ENST00000356352 TBC1D2BQ9UPU7 963 aa7.79□□□□□ -1.16
UPF2-201ENST00000356352 PATL2C9JE40 543 aaKnown RBP7.78□□□□□ -1.16
UPF2-201ENST00000356352 OFD1O75665 1012 aa7.78□□□□□ -1.16
UPF2-201ENST00000356352 HSP90AB2PQ58FF8 381 aa7.78□□□□□ -1.16
UPF2-201ENST00000356352 EXOC6Q8TAG9 804 aa7.78□□□□□ -1.16
UPF2-201ENST00000356352 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.78□□□□□ -1.16
UPF2-201ENST00000356352 APAF1O14727 1248 aa7.78□□□□□ -1.16
UPF2-201ENST00000356352 FOXD4L6Q3SYB3 417 aaPredicted RBP7.78□□□□□ -1.16
UPF2-201ENST00000356352 FOXD4L3Q6VB84 417 aaPredicted RBP7.78□□□□□ -1.16
UPF2-201ENST00000356352 SMG6Q86US8 1419 aaKnown RBP7.78□□□□□ -1.16
UPF2-201ENST00000356352 CCDC39Q9UFE4 941 aa7.78□□□□□ -1.16
UPF2-201ENST00000356352 UBTFL1P0CB47 393 aaPredicted RBP7.77□□□□□ -1.17
UPF2-201ENST00000356352 WASHC4Q2M389 1173 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 ERC1Q8IUD2 1116 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 SMARCE1Q969G3 411 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 AEBP2Q6ZN18 517 aaPredicted RBP7.77□□□□□ -1.17
UPF2-201ENST00000356352 TXLNAP40222 546 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 MCM2P49736 904 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 SCAPERQ9BY12 1400 aa7.77□□□□□ -1.17
UPF2-201ENST00000356352 GNAI3P08754 354 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 TXLNBQ8N3L3 684 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 CCDC27Q2M243 656 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 KIF6Q6ZMV9 814 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 GAS2L2Q8NHY3 880 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 IFT57Q9NWB7 429 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 FILIP1LQ4L180 1135 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 MTERF4Q7Z6M4 381 aaKnown RBP7.76□□□□□ -1.17
UPF2-201ENST00000356352 CAGE1Q8TC20 777 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 NEUROD6Q96NK8 337 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 GPRASP1Q5JY77 1395 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 HMGB2P26583 209 aaKnown RBP7.76□□□□□ -1.17
UPF2-201ENST00000356352 CCDC30Q5VVM6 783 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 MAGEC2Q9UBF1 373 aaPredicted RBP7.76□□□□□ -1.17
UPF2-201ENST00000356352 RRBP1Q9P2E9 1410 aaKnown RBP7.76□□□□□ -1.17
UPF2-201ENST00000356352 PLIN1O60240 522 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 CDK5RAP3Q96JB5 506 aa7.76□□□□□ -1.17
UPF2-201ENST00000356352 CWC15Q9P013 229 aaKnown RBP7.76□□□□□ -1.17
UPF2-201ENST00000356352 FYCO1Q9BQS8 1478 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 FANCIQ9NVI1 1328 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 CCDC191Q8NCU4 936 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 PDCP20941 246 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 ZRSR2Q15696 482 aaKnown RBP7.75□□□□□ -1.17
UPF2-201ENST00000356352 ZNF396Q96N95 335 aaPredicted RBP7.75□□□□□ -1.17
UPF2-201ENST00000356352 GNL3LQ9NVN8 582 aaKnown RBP7.75□□□□□ -1.17
UPF2-201ENST00000356352 C22orf23Q9BZE7 217 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 SYCP1Q15431 976 aa7.75□□□□□ -1.17
UPF2-201ENST00000356352 MBD3O95983 291 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 ZFYVE27Q5T4F4 411 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 NECTIN2Q92692 538 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 FSD1Q9BTV5 496 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 FANCD2Q9BXW9 1451 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 IKQ13123 557 aaPredicted RBP7.74□□□□□ -1.17
UPF2-201ENST00000356352 CCAR1Q8IX12 1150 aaKnown RBP7.74□□□□□ -1.17
UPF2-201ENST00000356352 OSCARQ8IYS5 282 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 CLASRPQ8N2M8 674 aaKnown RBP7.74□□□□□ -1.17
UPF2-201ENST00000356352 LUC7LQ9NQ29 371 aaKnown RBP7.74□□□□□ -1.17
UPF2-201ENST00000356352 PLEKHO1Q53GL0 409 aaPredicted RBP7.74□□□□□ -1.17
UPF2-201ENST00000356352 ANKRD18AQ8IVF6 992 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.74□□□□□ -1.17
UPF2-201ENST00000356352 DACH1Q9UI36 760 aa7.74□□□□□ -1.17
UPF2-201ENST00000356352 CNTLNQ9NXG0 1405 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 ERLIN2O94905 339 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 TMEM132AQ24JP5 1023 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 SDF4Q9BRK5 362 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 FAM43AQ8N2R8 423 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 JMYQ8N9B5 988 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 NLRP2Q9NX02 1062 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 PDILTQ8N807 584 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 FYB1O15117 783 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 KINO60870 393 aaKnown RBP7.73□□□□□ -1.17
UPF2-201ENST00000356352 MAP7D2Q96T17 732 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 BRD4O60885 1362 aaPredicted RBP7.73□□□□□ -1.17
UPF2-201ENST00000356352 MRE11P49959 708 aa7.73□□□□□ -1.17
UPF2-201ENST00000356352 PNISRQ8TF01 805 aaKnown RBP7.72□□□□□ -1.17
UPF2-201ENST00000356352 CCDC158Q5M9N0 1113 aa7.72□□□□□ -1.17
UPF2-201ENST00000356352 ANKRD1Q15327 319 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms