RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 NCOA3Q9Y6Q9 1424 aa14.22□□□□□ -0.13
CNOT9-202ENST00000295701 ATF3P18847 181 aa14.21□□□□□ -0.13
CNOT9-202ENST00000295701 CADPS2Q86UW7 1296 aa14.21□□□□□ -0.13
CNOT9-202ENST00000295701 LRP6O75581 1613 aa14.21□□□□□ -0.13
CNOT9-202ENST00000295701 NRXN3Q9Y4C0 1643 aa14.2□□□□□ -0.14
CNOT9-202ENST00000295701 MNX1P50219 401 aaPredicted RBP14.2□□□□□ -0.14
CNOT9-202ENST00000295701 DIP2AQ14689 1571 aa14.2□□□□□ -0.14
CNOT9-202ENST00000295701 PIK3R4Q99570 1358 aa14.2□□□□□ -0.14
CNOT9-202ENST00000295701 SPHKAPQ2M3C7 1700 aa14.19□□□□□ -0.14
CNOT9-202ENST00000295701 ZNF326Q5BKZ1 582 aaKnown RBP14.19□□□□□ -0.14
CNOT9-202ENST00000295701 BRINP3Q76B58 766 aa14.19□□□□□ -0.14
CNOT9-202ENST00000295701 TRPM2O94759 1503 aa14.19□□□□□ -0.14
CNOT9-202ENST00000295701 AHDC1Q5TGY3 1603 aaPredicted RBP14.17□□□□□ -0.14
CNOT9-202ENST00000295701 MEX3CQ5U5Q3 659 aaKnown RBP14.17□□□□□ -0.14
CNOT9-202ENST00000295701 ZRANB1Q9UGI0 708 aa14.17□□□□□ -0.14
CNOT9-202ENST00000295701 METP08581 1390 aa14.17□□□□□ -0.14
CNOT9-202ENST00000295701 NUTM2BA6NNL0 878 aaPredicted RBP14.16□□□□□ -0.14
CNOT9-202ENST00000295701 NUTM2EB1AL46 878 aaPredicted RBP14.16□□□□□ -0.14
CNOT9-202ENST00000295701 NUTM2AQ8IVF1 878 aaPredicted RBP14.16□□□□□ -0.14
CNOT9-202ENST00000295701 DDX17Q92841 729 aaKnown RBP14.16□□□□□ -0.14
CNOT9-202ENST00000295701 SPATA31A6Q5VVP1 1343 aa14.15□□□□□ -0.14
CNOT9-202ENST00000295701 XRN1Q8IZH2 1706 aaKnown RBP14.15□□□□□ -0.14
CNOT9-202ENST00000295701 SHPRHQ149N8 1683 aa14.15□□□□□ -0.14
CNOT9-202ENST00000295701 SETBP1Q9Y6X0 1596 aa14.14□□□□□ -0.15
CNOT9-202ENST00000295701 TRIM52Q96A61 297 aa14.14□□□□□ -0.15
CNOT9-202ENST00000295701 CLTCL1P53675 1640 aa14.14□□□□□ -0.15
CNOT9-202ENST00000295701 NEXMIFQ5QGS0 1516 aa14.12□□□□□ -0.15
CNOT9-202ENST00000295701 MST1RQ04912 1400 aa14.12□□□□□ -0.15
CNOT9-202ENST00000295701 ASXL1Q8IXJ9 1541 aa14.11□□□□□ -0.15
CNOT9-202ENST00000295701 PAK3O75914 559 aaPredicted RBP14.11□□□□□ -0.15
CNOT9-202ENST00000295701 ZNF772Q68DY9 489 aaPredicted RBP14.11□□□□□ -0.15
CNOT9-202ENST00000295701 MIER1Q8N108 512 aa14.11□□□□□ -0.15
CNOT9-202ENST00000295701 ZNF579Q8NAF0 562 aaKnown RBP14.11□□□□□ -0.15
CNOT9-202ENST00000295701 KIF1BO60333 1816 aa14.11□□□□□ -0.15
CNOT9-202ENST00000295701 CLCN6P51797 869 aa14.1□□□□□ -0.15
CNOT9-202ENST00000295701 DCCP43146 1447 aa14.09□□□□□ -0.15
CNOT9-202ENST00000295701 NAIPQ13075 1403 aa14.09□□□□□ -0.15
CNOT9-202ENST00000295701 NHSL1Q5SYE7 1610 aa14.09□□□□□ -0.15
CNOT9-202ENST00000295701 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
CNOT9-202ENST00000295701 UPF1Q92900 1129 aaKnown RBP eCLIP14.09□□□□□ -0.15
CNOT9-202ENST00000295701 NALCNQ8IZF0 1738 aa14.09□□□□□ -0.15
CNOT9-202ENST00000295701 RXRBP28702 533 aa14.08□□□□□ -0.16
CNOT9-202ENST00000295701 AFF2P51816 1311 aa14.08□□□□□ -0.16
CNOT9-202ENST00000295701 SETD5Q9C0A6 1442 aa14.07□□□□□ -0.16
CNOT9-202ENST00000295701 ADGRL3Q9HAR2 1447 aa14.07□□□□□ -0.16
CNOT9-202ENST00000295701 RRBP1Q9P2E9 1410 aaKnown RBP14.07□□□□□ -0.16
CNOT9-202ENST00000295701 LRRC59Q96AG4 307 aaKnown RBP14.06□□□□□ -0.16
CNOT9-202ENST00000295701 ORAI2Q96SN7 254 aa14.05□□□□□ -0.16
CNOT9-202ENST00000295701 C8orf37Q96NL8 207 aa14.04□□□□□ -0.16
CNOT9-202ENST00000295701 PNPLA6Q8IY17 1366 aa14.04□□□□□ -0.16
CNOT9-202ENST00000295701 ROBO2Q9HCK4 1378 aa14.04□□□□□ -0.16
CNOT9-202ENST00000295701 C1orf167Q5SNV9 1468 aa14.04□□□□□ -0.16
CNOT9-202ENST00000295701 PLCD3Q8N3E9 789 aa14.03□□□□□ -0.16
CNOT9-202ENST00000295701 QTRT2Q9H974 415 aaKnown RBP14.03□□□□□ -0.16
CNOT9-202ENST00000295701 VGFO15240 615 aaPredicted RBP14.02□□□□□ -0.17
CNOT9-202ENST00000295701 ADAMTS2O95450 1211 aa14.02□□□□□ -0.17
CNOT9-202ENST00000295701 PPLO60437 1756 aa14.01□□□□□ -0.17
CNOT9-202ENST00000295701 NGLY1Q96IV0 654 aa13.99□□□□□ -0.17
CNOT9-202ENST00000295701 HFM1A2PYH4 1435 aa13.98□□□□□ -0.17
CNOT9-202ENST00000295701 PTCH1Q13635 1447 aa13.98□□□□□ -0.17
CNOT9-202ENST00000295701 SOS2Q07890 1332 aaPredicted RBP13.98□□□□□ -0.17
CNOT9-202ENST00000295701 RPGRIP1LQ68CZ1 1315 aa13.98□□□□□ -0.17
CNOT9-202ENST00000295701 PHF12Q96QT6 1004 aa13.98□□□□□ -0.17
CNOT9-202ENST00000295701 CDK12Q9NYV4 1490 aaPredicted RBP13.98□□□□□ -0.17
CNOT9-202ENST00000295701 RGS12O14924 1447 aa13.98□□□□□ -0.17
CNOT9-202ENST00000295701 ADGRF5Q8IZF2 1346 aa13.97□□□□□ -0.17
CNOT9-202ENST00000295701 RBM6P78332 1123 aaKnown RBP13.97□□□□□ -0.17
CNOT9-202ENST00000295701 RGL3Q3MIN7 710 aa13.97□□□□□ -0.17
CNOT9-202ENST00000295701 LAMC1P11047 1609 aa13.97□□□□□ -0.17
CNOT9-202ENST00000295701 NUTM2FA1L443 756 aa13.96□□□□□ -0.17
CNOT9-202ENST00000295701 WAPLQ7Z5K2 1190 aa13.96□□□□□ -0.17
CNOT9-202ENST00000295701 STK26Q9P289 416 aa13.96□□□□□ -0.17
CNOT9-202ENST00000295701 XPCQ01831 940 aaPredicted RBP13.95□□□□□ -0.18
CNOT9-202ENST00000295701 ESCO1Q5FWF5 840 aa13.95□□□□□ -0.18
CNOT9-202ENST00000295701 TMEM132EQ6IEE7 984 aa13.94□□□□□ -0.18
CNOT9-202ENST00000295701 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
CNOT9-202ENST00000295701 USP21Q9UK80 565 aa13.94□□□□□ -0.18
CNOT9-202ENST00000295701 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
CNOT9-202ENST00000295701 PRAG1Q86YV5 1406 aa13.93□□□□□ -0.18
CNOT9-202ENST00000295701 POTEIP0CG38 1075 aa13.93□□□□□ -0.18
CNOT9-202ENST00000295701 FOXO3O43524 673 aa13.92□□□□□ -0.18
CNOT9-202ENST00000295701 GALR2O43603 387 aaPredicted RBP13.92□□□□□ -0.18
CNOT9-202ENST00000295701 DCBLD2Q96PD2 775 aa13.92□□□□□ -0.18
CNOT9-202ENST00000295701 PLEKHH1Q9ULM0 1364 aa13.92□□□□□ -0.18
CNOT9-202ENST00000295701 FNBP4Q8N3X1 1017 aaPredicted RBP13.91□□□□□ -0.18
CNOT9-202ENST00000295701 MPHOSPH9Q99550 1183 aa13.91□□□□□ -0.18
CNOT9-202ENST00000295701 ZBTB47Q9UFB7 747 aaPredicted RBP13.91□□□□□ -0.18
CNOT9-202ENST00000295701 IFT172Q9UG01 1749 aa13.9□□□□□ -0.18
CNOT9-202ENST00000295701 SPATA31E1Q6ZUB1 1445 aa13.9□□□□□ -0.19
CNOT9-202ENST00000295701 PXDNQ92626 1479 aa13.89□□□□□ -0.19
CNOT9-202ENST00000295701 TRPC5Q9UL62 973 aaPredicted RBP13.89□□□□□ -0.19
CNOT9-202ENST00000295701 COL22A1Q8NFW1 1626 aaPredicted RBP13.89□□□□□ -0.19
CNOT9-202ENST00000295701 CCDC144AA2RUR9 1427 aa13.89□□□□□ -0.19
CNOT9-202ENST00000295701 NPHP3Q7Z494 1330 aa13.89□□□□□ -0.19
CNOT9-202ENST00000295701 CDC42BPGQ6DT37 1551 aa13.88□□□□□ -0.19
CNOT9-202ENST00000295701 MYOM2P54296 1465 aa13.88□□□□□ -0.19
CNOT9-202ENST00000295701 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
CNOT9-202ENST00000295701 ATRNO75882 1429 aa13.88□□□□□ -0.19
CNOT9-202ENST00000295701 MARF1Q9Y4F3 1742 aaKnown RBP13.87□□□□□ -0.19
CNOT9-202ENST00000295701 LRPPRCP42704 1394 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 249 ms