RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 MAST1Q9Y2H9 1570 aa18.21■□□□□ 0.51
PTPRA-201ENST00000216877 PPP1R9BQ96SB3 815 aa18.21■□□□□ 0.51
PTPRA-201ENST00000216877 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.2■□□□□ 0.5
PTPRA-201ENST00000216877 GPATCH8Q9UKJ3 1502 aaKnown RBP18.2■□□□□ 0.5
PTPRA-201ENST00000216877 PLEKHH1Q9ULM0 1364 aa18.2■□□□□ 0.5
PTPRA-201ENST00000216877 TAF7LQ5H9L4 462 aa18.2■□□□□ 0.5
PTPRA-201ENST00000216877 PCDHB15Q9Y5E8 787 aa18.2■□□□□ 0.5
PTPRA-201ENST00000216877 ADGRL2O95490 1459 aa18.2■□□□□ 0.5
PTPRA-201ENST00000216877 TNNQ9UQP3 1299 aa18.2■□□□□ 0.5
PTPRA-201ENST00000216877 SLFN5Q08AF3 891 aa18.19■□□□□ 0.5
PTPRA-201ENST00000216877 TERF1P54274 439 aa18.19■□□□□ 0.5
PTPRA-201ENST00000216877 NOL7Q9UMY1 257 aaKnown RBP18.19■□□□□ 0.5
PTPRA-201ENST00000216877 RRP7AQ9Y3A4 280 aaKnown RBP18.19■□□□□ 0.5
PTPRA-201ENST00000216877 MYO5CQ9NQX4 1742 aa18.19■□□□□ 0.5
PTPRA-201ENST00000216877 ABCA9Q8IUA7 1624 aa18.18■□□□□ 0.5
PTPRA-201ENST00000216877 UTP14CQ5TAP6 766 aaKnown RBP18.18■□□□□ 0.5
PTPRA-201ENST00000216877 FTSJ3Q8IY81 847 aaKnown RBP18.18■□□□□ 0.5
PTPRA-201ENST00000216877 ZKSCAN5Q9Y2L8 839 aa18.18■□□□□ 0.5
PTPRA-201ENST00000216877 AEBP1Q8IUX7 1158 aa18.18■□□□□ 0.5
PTPRA-201ENST00000216877 ZNF830Q96NB3 372 aaPredicted RBP18.18■□□□□ 0.5
PTPRA-201ENST00000216877 RBM27Q9P2N5 1060 aaKnown RBP18.18■□□□□ 0.5
PTPRA-201ENST00000216877 RBSNQ9H1K0 784 aa18.17■□□□□ 0.5
PTPRA-201ENST00000216877 KIAA2012Q0VF49 1180 aa18.16■□□□□ 0.5
PTPRA-201ENST00000216877 IPO4Q8TEX9 1081 aaKnown RBP18.16■□□□□ 0.5
PTPRA-201ENST00000216877 TRERF1Q96PN7 1200 aa18.16■□□□□ 0.5
PTPRA-201ENST00000216877 RPRD2Q5VT52 1461 aaKnown RBP18.16■□□□□ 0.5
PTPRA-201ENST00000216877 KCNJ4P48050 445 aa18.15■□□□□ 0.5
PTPRA-201ENST00000216877 FOXD4L6Q3SYB3 417 aaPredicted RBP18.15■□□□□ 0.5
PTPRA-201ENST00000216877 FOXD4L3Q6VB84 417 aaPredicted RBP18.15■□□□□ 0.5
PTPRA-201ENST00000216877 PTMSP20962 102 aa18.15■□□□□ 0.5
PTPRA-201ENST00000216877 PRIM1P49642 420 aaKnown RBP18.15■□□□□ 0.5
PTPRA-201ENST00000216877 GTPBP4Q9BZE4 634 aaKnown RBP18.15■□□□□ 0.5
PTPRA-201ENST00000216877 PRPF40AO75400 957 aaKnown RBP18.15■□□□□ 0.5
PTPRA-201ENST00000216877 KIF20AO95235 890 aa18.15■□□□□ 0.5
PTPRA-201ENST00000216877 LETM1O95202 739 aaPredicted RBP18.14■□□□□ 0.5
PTPRA-201ENST00000216877 TMEM51Q9NW97 253 aa18.14■□□□□ 0.5
PTPRA-201ENST00000216877 ZNF644Q9H582 1327 aaPredicted RBP18.14■□□□□ 0.49
PTPRA-201ENST00000216877 CCDC39Q9UFE4 941 aa18.14■□□□□ 0.49
PTPRA-201ENST00000216877 KDM5DQ9BY66 1539 aa18.14■□□□□ 0.49
PTPRA-201ENST00000216877 MBD5Q9P267 1494 aa18.14■□□□□ 0.49
PTPRA-201ENST00000216877 ATP2B3Q16720 1220 aa18.13■□□□□ 0.49
PTPRA-201ENST00000216877 CERS3Q8IU89 383 aa18.13■□□□□ 0.49
PTPRA-201ENST00000216877 C17orf53Q8N3J3 647 aaPredicted RBP18.13■□□□□ 0.49
PTPRA-201ENST00000216877 RBM42Q9BTD8 480 aaKnown RBP18.13■□□□□ 0.49
PTPRA-201ENST00000216877 TROQ12816 1431 aaPredicted RBP18.13■□□□□ 0.49
PTPRA-201ENST00000216877 PDCL2Q8N4E4 241 aa18.12■□□□□ 0.49
PTPRA-201ENST00000216877 PRG4Q92954 1404 aaPredicted RBP18.12■□□□□ 0.49
PTPRA-201ENST00000216877 SYCE3A1L190 88 aa18.12■□□□□ 0.49
PTPRA-201ENST00000216877 ZNF500O60304 480 aaPredicted RBP18.11■□□□□ 0.49
PTPRA-201ENST00000216877 ZSCAN23Q3MJ62 389 aa18.11■□□□□ 0.49
PTPRA-201ENST00000216877 PDE3AQ14432 1141 aa18.11■□□□□ 0.49
PTPRA-201ENST00000216877 EIF3AQ14152 1382 aaKnown RBP18.11■□□□□ 0.49
PTPRA-201ENST00000216877 RAB3GAP1Q15042 981 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 NBPF1Q3BBV0 1214 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 KIF3AQ9Y496 699 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 PLXNC1O60486 1568 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 BAG4O95429 457 aaKnown RBP18.1■□□□□ 0.49
PTPRA-201ENST00000216877 U2AF2P26368 475 aaKnown RBP eCLIP18.1■□□□□ 0.492e-8■■■□□ 17.9
PTPRA-201ENST00000216877 CAMSAP2Q08AD1 1489 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 DMRT2Q9Y5R5 561 aa18.1■□□□□ 0.49
PTPRA-201ENST00000216877 HNRNPMP52272 730 aaKnown RBP eCLIP18.09■□□□□ 0.494e-7■■■■■ 28.7
PTPRA-201ENST00000216877 KLHL40Q2TBA0 621 aa18.09■□□□□ 0.49
PTPRA-201ENST00000216877 LNPKQ9C0E8 428 aa18.09■□□□□ 0.49
PTPRA-201ENST00000216877 ABCC5O15440 1437 aa18.09■□□□□ 0.49
PTPRA-201ENST00000216877 DEPDC5O75140 1603 aa18.09■□□□□ 0.49
PTPRA-201ENST00000216877 SHANK2Q9UPX8 1470 aa18.09■□□□□ 0.49
PTPRA-201ENST00000216877 RLBP1P12271 317 aa18.08■□□□□ 0.49
PTPRA-201ENST00000216877 ERICH4A6NGS2 130 aa18.08■□□□□ 0.48
PTPRA-201ENST00000216877 PPP2R1AP30153 589 aa18.08■□□□□ 0.48
PTPRA-201ENST00000216877 PARD3Q8TEW0 1356 aa18.08■□□□□ 0.48
PTPRA-201ENST00000216877 ARAP3Q8WWN8 1544 aa18.08■□□□□ 0.48
PTPRA-201ENST00000216877 UNC13BO14795 1591 aa18.08■□□□□ 0.48
PTPRA-201ENST00000216877 CHAF1AQ13111 956 aaPredicted RBP18.07■□□□□ 0.48
PTPRA-201ENST00000216877 POLR1AO95602 1720 aaPredicted RBP18.07■□□□□ 0.48
PTPRA-201ENST00000216877 BCORL1Q5H9F3 1711 aa18.07■□□□□ 0.48
PTPRA-201ENST00000216877 PER1O15534 1290 aaPredicted RBP18.07■□□□□ 0.48
PTPRA-201ENST00000216877 ITPRIPQ8IWB1 547 aa18.07■□□□□ 0.48
PTPRA-201ENST00000216877 CIZ1Q9ULV3 898 aaPredicted RBP18.07■□□□□ 0.48
PTPRA-201ENST00000216877 TEX14Q8IWB6 1497 aa18.06■□□□□ 0.48
PTPRA-201ENST00000216877 CHAMP1Q96JM3 812 aa18.06■□□□□ 0.48
PTPRA-201ENST00000216877 ZNF692Q9BU19 519 aaPredicted RBP18.06■□□□□ 0.48
PTPRA-201ENST00000216877 DAPK1P53355 1430 aa18.06■□□□□ 0.48
PTPRA-201ENST00000216877 ARHGEF12Q9NZN5 1544 aa18.05■□□□□ 0.48
PTPRA-201ENST00000216877 GAS2L2Q8NHY3 880 aa18.05■□□□□ 0.48
PTPRA-201ENST00000216877 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.05■□□□□ 0.48
PTPRA-201ENST00000216877 MAGI2Q86UL8 1455 aa18.05■□□□□ 0.48
PTPRA-201ENST00000216877 TMF1P82094 1093 aa18.05■□□□□ 0.48
PTPRA-201ENST00000216877 MYRIPQ8NFW9 859 aa18.04■□□□□ 0.48
PTPRA-201ENST00000216877 K7ELQ4 463 aaPredicted RBP18.04■□□□□ 0.48
PTPRA-201ENST00000216877 CD2BP2O95400 341 aaKnown RBP18.03■□□□□ 0.48
PTPRA-201ENST00000216877 HMGN5P82970 282 aaKnown RBP18.03■□□□□ 0.48
PTPRA-201ENST00000216877 TTC12Q9H892 705 aaPredicted RBP18.03■□□□□ 0.48
PTPRA-201ENST00000216877 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.03■□□□□ 0.483e-6■■□□□ 11.9
PTPRA-201ENST00000216877 HS1BP3Q53T59 392 aa18.03■□□□□ 0.48
PTPRA-201ENST00000216877 PPRC1Q5VV67 1664 aaKnown RBP18.03■□□□□ 0.48
PTPRA-201ENST00000216877 SMC5Q8IY18 1101 aa18.02■□□□□ 0.48
PTPRA-201ENST00000216877 ROCK1Q13464 1354 aa18.02■□□□□ 0.48
PTPRA-201ENST00000216877 ZBTB9Q96C00 473 aa18.02■□□□□ 0.47
PTPRA-201ENST00000216877 INO80Q9ULG1 1556 aaPredicted RBP18.01■□□□□ 0.47
PTPRA-201ENST00000216877 TNNT3P45378 269 aaPredicted RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms