RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 GRIN1Q05586 938 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 RESTQ13127 1097 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 DSG2Q14126 1118 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 MAPRE1Q15691 268 aaKnown RBP8.35□□□□□ -1.07
CLK1-215ENST00000621181 SOWAHAQ2M3V2 549 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 HSF5Q4G112 596 aaPredicted RBP8.35□□□□□ -1.07
CLK1-215ENST00000621181 LYSMD4Q5XG99 296 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 VSTM1Q6UX27 236 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 OSTM1Q86WC4 334 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SFTPA1Q8IWL2 248 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 ADGRG2Q8IZP9 1017 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SYCP3Q8IZU3 236 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 HDDC3Q8N4P3 179 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 IL17RCQ8NAC3 791 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 FAM84AQ96KN4 292 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SPATA17Q96L03 361 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 ACCSQ96QU6 501 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 PNKPQ96T60 521 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SYT15Q9BQS2 421 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 PDE11AQ9HCR9 933 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 TMEM74BQ9NUR3 256 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SEL1LQ9UBV2 794 aa8.35□□□□□ -1.07
CLK1-215ENST00000621181 SPAARA0A1B0GVQ0 90 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 GOLGA8IPA6NC78 632 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 GOLGA8JA6NMD2 632 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 SGK1O00141 431 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 AP5Z1O43299 807 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 ATP2C2O75185 946 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 ADH1CP00326 375 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 HNRNPLP14866 589 aaKnown RBP eCLIP8.34□□□□□ -1.07
CLK1-215ENST00000621181 LMO2P25791 158 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 EIF2DP41214 584 aaKnown RBP8.34□□□□□ -1.07
CLK1-215ENST00000621181 DPP6P42658 865 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 USP46P62068 366 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 RING1Q06587 406 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 BYSLQ13895 437 aaKnown RBP8.34□□□□□ -1.07
CLK1-215ENST00000621181 DHCR24Q15392 516 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 GAB4Q2WGN9 574 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 EOGTQ5NDL2 527 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 SCARA3Q6AZY7 606 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 FAM171BQ6P995 826 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 RBM43Q6ZSC3 357 aaKnown RBP8.34□□□□□ -1.07
CLK1-215ENST00000621181 FRMD1Q8N878 549 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 ZSWIM2Q8NEG5 633 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 OLIG1Q8TAK6 271 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 MYLPFQ96A32 169 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 ANKRD36BP1Q96IX9 119 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 CEP295NLQ96MC4 621 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 MMS19Q96T76 1030 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 GTPBP2Q9BX10 602 aaKnown RBP8.34□□□□□ -1.07
CLK1-215ENST00000621181 ARHGEF4Q9NR80 690 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 SIX4Q9UIU6 781 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 KLK13Q9UKR3 277 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 CDH9Q9ULB4 789 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 NEUROG3Q9Y4Z2 214 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 CPQQ9Y646 472 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.34□□□□□ -1.07
CLK1-215ENST00000621181 CELSR3Q9NYQ7 3312 aa8.34□□□□□ -1.07
CLK1-215ENST00000621181 TCRBV21S2A2A0A5A6 115 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 ZNF840PA6NDX5 716 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 F8VP50 259 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 TRIM66O15016 1216 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 PDGFRBP09619 1106 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 IDEP14735 1019 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 PDCP20941 246 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 GARTP22102 1010 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 ITPKAP23677 461 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 HOXD12P35452 270 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 GRIA2P42262 883 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 SLC6A11P48066 632 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 PPP3CCP48454 512 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 SLC7A9P82251 487 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 KDSRQ06136 332 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 GFPT1Q06210 699 aaPredicted RBP8.33□□□□□ -1.08
CLK1-215ENST00000621181 MESP2Q0VG99 397 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 IFRD2Q12894 506 aaPredicted RBP8.33□□□□□ -1.08
CLK1-215ENST00000621181 SPDYCQ5MJ68 293 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 EMC10Q5UCC4 262 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 LARP1BQ659C4 914 aaKnown RBP8.33□□□□□ -1.08
CLK1-215ENST00000621181 SLC23A3Q6PIS1 610 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 DPH6Q7L8W6 267 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 HS2ST1Q7LGA3 356 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 C12orf40Q86WS4 652 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 DDX42Q86XP3 938 aaKnown RBP eCLIP8.33□□□□□ -1.08
CLK1-215ENST00000621181 CXorf38Q8TB03 319 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 HPDLQ96IR7 371 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 EPSTI1Q96J88 318 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 SLITRK1Q96PX8 696 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 CBWD1Q9BRT8 395 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 RNF38Q9H0F5 515 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 PCIF1Q9H4Z3 704 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 ZDHHC4Q9NPG8 344 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 CRTAC1Q9NQ79 661 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 CFAP97Q9P2B7 532 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 STK17AQ9UEE5 414 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 LHX6Q9UPM6 363 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 MSRB2Q9Y3D2 182 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 TBC1D3BA6NDS4 549 aa8.33□□□□□ -1.08
CLK1-215ENST00000621181 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.33□□□□□ -1.08
CLK1-215ENST00000621181 RRP9O43818 475 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms