RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DNAAF2Q9NVR5 837 aaKnown RBP18.02■□□□□ 0.48
VPS29-204ENST00000548259 SIX4Q9UIU6 781 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 ASCC3Q8N3C0 2202 aaKnown RBP18.02■□□□□ 0.47
VPS29-204ENST00000548259 GOLGA8IPA6NC78 632 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 GOLGA8JA6NMD2 632 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 F8VP50 259 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 HCRTO43612 131 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 NDUFS2O75306 463 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 PRPF6O94906 941 aaKnown RBP18.01■□□□□ 0.47
VPS29-204ENST00000548259 RTN3O95197 1032 aaPredicted RBP18.01■□□□□ 0.47
VPS29-204ENST00000548259 LMO2P25791 158 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 NTSR1P30989 418 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 TRIP6Q15654 476 aaKnown RBP18.01■□□□□ 0.47
VPS29-204ENST00000548259 C10orf76Q5T2E6 689 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 STXBP4Q6ZWJ1 553 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 SFTPA1Q8IWL2 248 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 RGL4Q8IZJ4 473 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 GPD1LQ8N335 351 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 CXorf38Q8TB03 319 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 OVCA2Q8WZ82 227 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 FOXJ1Q92949 421 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 STRA6Q9BX79 667 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 ZDHHC5Q9C0B5 715 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 CCDC86Q9H6F5 360 aaKnown RBP18.01■□□□□ 0.47
VPS29-204ENST00000548259 CRTAC1Q9NQ79 661 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 OLFML3Q9NRN5 406 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 INTS13Q9NVM9 706 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 TBC1D7Q9P0N9 293 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 CALCOCO1Q9P1Z2 691 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 APOBEC2Q9Y235 224 aaKnown RBP18.01■□□□□ 0.47
VPS29-204ENST00000548259 ANK1P16157 1881 aa18.01■□□□□ 0.47
VPS29-204ENST00000548259 CACNA1EQ15878 2313 aa18■□□□□ 0.47
VPS29-204ENST00000548259 ANTXRLA6NF34 631 aa18■□□□□ 0.47
VPS29-204ENST00000548259 ZNF233A6NK53 670 aa18■□□□□ 0.47
VPS29-204ENST00000548259 SCAMP3O14828 347 aaKnown RBP18■□□□□ 0.47
VPS29-204ENST00000548259 HOXC11O43248 304 aaPredicted RBP18■□□□□ 0.47
VPS29-204ENST00000548259 FAM163BP0C2L3 166 aa18■□□□□ 0.47
VPS29-204ENST00000548259 YWHAQP27348 245 aa18■□□□□ 0.47
VPS29-204ENST00000548259 GNL1P36915 607 aaPredicted RBP18■□□□□ 0.47
VPS29-204ENST00000548259 WNT7BP56706 349 aa18■□□□□ 0.47
VPS29-204ENST00000548259 KCNA1Q09470 495 aa18■□□□□ 0.47
VPS29-204ENST00000548259 ANO4Q32M45 955 aa18■□□□□ 0.47
VPS29-204ENST00000548259 PLEKHG6Q3KR16 790 aa18■□□□□ 0.47
VPS29-204ENST00000548259 MDH1BQ5I0G3 518 aa18■□□□□ 0.47
VPS29-204ENST00000548259 LIMS2Q7Z4I7 341 aa18■□□□□ 0.47
VPS29-204ENST00000548259 BRAPQ7Z569 592 aa18■□□□□ 0.47
VPS29-204ENST00000548259 C12orf40Q86WS4 652 aa18■□□□□ 0.47
VPS29-204ENST00000548259 DEFB119Q8N690 84 aa18■□□□□ 0.47
VPS29-204ENST00000548259 SPRYD3Q8NCJ5 442 aa18■□□□□ 0.47
VPS29-204ENST00000548259 KBTBD7Q8WVZ9 684 aa18■□□□□ 0.47
VPS29-204ENST00000548259 NACA2Q9H009 215 aa18■□□□□ 0.47
VPS29-204ENST00000548259 PCIF1Q9H4Z3 704 aa18■□□□□ 0.47
VPS29-204ENST00000548259 OBSL1O75147 1896 aa18■□□□□ 0.47
VPS29-204ENST00000548259 ATP8B3O60423 1300 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 EIF4E1BA6NMX2 242 aaKnown RBP17.99■□□□□ 0.47
VPS29-204ENST00000548259 TULP3O75386 442 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 CD59P13987 128 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 IDEP14735 1019 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 GABRG2P18507 467 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 GJB2P29033 226 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 TNNC1P63316 161 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 MESP2Q0VG99 397 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 SCAPQ12770 1279 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 IFRD2Q12894 506 aaPredicted RBP17.99■□□□□ 0.47
VPS29-204ENST00000548259 WDR45BQ5MNZ6 344 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 HECTD3Q5T447 861 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 RRAGBQ5VZM2 374 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 CHPFQ8IZ52 775 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 NUP93Q8N1F7 819 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 NAT16Q8N8M0 369 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 TRIML1Q8N9V2 468 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 TERB1Q8NA31 727 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 OR6B3Q8NGW1 331 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 ADAMTS14Q8WXS8 1223 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 FBXO32Q969P5 355 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 HSPA12BQ96MM6 686 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 CBWD1Q9BRT8 395 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 KIAA1586Q9HCI6 787 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 ZDHHC4Q9NPG8 344 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 FSCN3Q9NQT6 498 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 GPSM3Q9Y4H4 160 aa17.99■□□□□ 0.47
VPS29-204ENST00000548259 PCNX2A6NKB5 2137 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 IGHV1OR15-9A0A0B4J2B8 117 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 SH3BP5O60239 455 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 PDZD3Q86UT5 571 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 WDR49Q8IV35 697 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 NAXDQ8IW45 347 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 ETFBKMTQ8IXQ9 262 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 SCFD1Q8WVM8 642 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 XPO6Q96QU8 1125 aaKnown RBP17.98■□□□□ 0.47
VPS29-204ENST00000548259 DUSP9Q99956 384 aaKnown RBP17.98■□□□□ 0.47
VPS29-204ENST00000548259 SPHK2Q9NRA0 654 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 STARD13Q9Y3M8 1113 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 KIAA1549LQ6ZVL6 1849 aa17.98■□□□□ 0.47
VPS29-204ENST00000548259 TACC1O75410 805 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 CHRM1P11229 460 aaPredicted RBP17.97■□□□□ 0.47
VPS29-204ENST00000548259 PTPN1P18031 435 aaKnown RBP17.97■□□□□ 0.47
VPS29-204ENST00000548259 TUBP50607 506 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 FAM193AP78312 1265 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 GOLGA8FQ08AF8 430 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms