RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ABRAQ8N0Z2 381 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 GDPD5Q8WTR4 605 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 RERGQ96A58 199 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 CNPY3Q9BT09 278 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 LRRIQ1Q96JM4 1722 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 TTC4O95801 387 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 HLA-DRAP01903 254 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 MSH2P43246 934 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 C16orf46Q6P387 395 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 MMS22LQ6ZRQ5 1243 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 IFT20Q8IY31 132 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 ZNF248Q8NDW4 579 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 VPS37AQ8NEZ2 397 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 OTULINQ96BN8 352 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 USP28Q96RU2 1077 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 KXD1Q9BQD3 176 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 MTMR12Q9C0I1 747 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 PDE11AQ9HCR9 933 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 DDX4Q9NQI0 724 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 SLC27A6Q9Y2P4 619 aa9.57□□□□□ -0.88
LIMCH1-202ENST00000381753 YDJCA8MPS7 323 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 TUBB4AP04350 444 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 AGXTP21549 392 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 KCNJ5P48544 419 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ARHGDIAP52565 204 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ORC1Q13415 861 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PCBP1Q15365 356 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PRPF38BQ5VTL8 546 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SETD3Q86TU7 594 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 HJURPQ8NCD3 748 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 FAM71BQ8TC56 605 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 TMEM159Q96B96 161 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ACE2Q9BYF1 805 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PLEKHA4Q9H4M7 779 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 GTSE1Q9NYZ3 720 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CD274Q9NZQ7 290 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 COG5Q9UP83 839 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CRYL1Q9Y2S2 319 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 HPDP32754 393 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SOAT1P35610 550 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 GRM2Q14416 872 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SMAD1Q15797 465 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PLEKHG6Q3KR16 790 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ALS2CLQ60I27 953 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 NUGGCQ68CJ6 796 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PARGQ86W56 976 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SMYD4Q8IYR2 804 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 MAGOHBQ96A72 148 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 LRGUKQ96M69 825 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 NAPGQ99747 312 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SFXN1Q9H9B4 322 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 MCCC2Q9HCC0 563 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 HOMER3Q9NSC5 361 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 INTS10Q9NVR2 710 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 DNAJC28Q9NX36 388 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SPASTQ9UBP0 616 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 FBXL5Q9UKA1 691 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 DMTF1Q9Y222 760 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 DTNAQ9Y4J8 743 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PPP6R2O75170 966 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 VIPP01282 170 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 MYBL1P10243 752 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ALAS2P22557 587 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CCNE1P24864 410 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PLA2G4AP47712 749 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 PLGLB1Q02325 96 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 GLE1Q53GS7 698 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 AARS2Q5JTZ9 985 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 FUT10Q6P4F1 479 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 AIFM3Q96NN9 605 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CALCOCO1Q9P1Z2 691 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CHORDC1Q9UHD1 332 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 TBX20Q9UMR3 447 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ROBO1Q9Y6N7 1651 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 A8MX80 341 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 H0YGN5 161 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 FPGTO14772 594 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 MGEA5O60502 916 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 CNPP09543 421 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 HNRNPH2P55795 449 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ILF3Q12906 894 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 DUSP4Q13115 394 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 LEMD2Q8NC56 503 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 EDEM1Q92611 657 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 DACT3Q96B18 629 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 ALDH8A1Q9H2A2 487 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 RNF19AQ9NV58 838 aa9.56□□□□□ -0.88
LIMCH1-202ENST00000381753 SMIM35A0A1B0GVV1 85 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 KHNYNO15037 678 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 GCATO75600 419 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 CYP7B1O75881 506 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 RHOXF2BP0C7M4 288 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 CCNYL3P0C7X3 344 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 GFAPP14136 432 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 ZNF24P17028 368 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 BRD2P25440 801 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 SULT2A1Q06520 285 aa9.55□□□□□ -0.88
LIMCH1-202ENST00000381753 UGT3A1Q6NUS8 523 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms