RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 INTS6LQ5JSJ4 861 aaKnown RBP14.44□□□□□ -0.1
PTPRF-202ENST00000372405 ARCQ7LC44 396 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 TSEN2Q8NCE0 465 aaKnown RBP14.44□□□□□ -0.1
PTPRF-202ENST00000372405 URGCPQ8TCY9 931 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 FAM172AQ8WUF8 416 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 SEPT8Q92599 483 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 MYLPFQ96A32 169 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 CASD1Q96PB1 797 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 CALCOCO1Q9P1Z2 691 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 HCSTQ9UBK5 93 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 HPCAL4Q9UM19 191 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 PATJQ8NI35 1801 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 HHLA1C9JL84 531 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 TMEM189-UBE2V1I3L0A0 370 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CAPN15O75808 1086 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CXCL10P02778 98 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PAX3P23760 479 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 SDC4P31431 198 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CYP2C18P33260 490 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 ARSEP51690 589 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 OVOS1Q6IE37 1185 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 METTL23Q86XA0 190 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CENPIQ92674 756 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 VWCEQ96DN2 955 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PPP1R12CQ9BZL4 782 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 RAB17Q9H0T7 212 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 NGRNQ9NPE2 291 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 GRHL1Q9NZI5 618 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 KANSL3Q9P2N6 904 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 DSEQ9UL01 958 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 ENDOD1O94919 500 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 TYMPP19971 482 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PTPN9P43378 593 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 RPL21P46778 160 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 OR1G1P47890 313 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 ATXN1P54253 815 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 SLC8A3P57103 927 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 MRPS5P82675 430 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 RNASELQ05823 741 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 HLTFQ14527 1009 aaKnown RBP eCLIP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CCNG2Q16589 344 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 RAB41Q5JT25 222 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 HSPH1Q92598 858 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 APBB2Q92870 758 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 DDX23Q9BUQ8 820 aaKnown RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 NRDE2Q9H7Z3 1164 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 CSNK1G1Q9HCP0 422 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 ZDHHC18Q9NUE0 388 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PCDHB8Q9UN66 801 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PRG3Q9Y2Y8 225 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-202ENST00000372405 SNX24Q9Y343 169 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 NEU2Q9Y3R4 380 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 PCDHB7Q9Y5E2 793 aa14.43□□□□□ -0.1
PTPRF-202ENST00000372405 NRP1O14786 923 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 TJP3O95049 919 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 DRG2P55039 364 aaKnown RBP14.42□□□□□ -0.1
PTPRF-202ENST00000372405 NNTQ13423 1086 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 OTUD1Q5VV17 481 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-202ENST00000372405 ZDHHC24Q6UX98 284 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 HFE2Q6ZVN8 426 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 CTU1Q7Z7A3 348 aaKnown RBP14.42□□□□□ -0.1
PTPRF-202ENST00000372405 SMARCD1Q96GM5 515 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 RUNDC3BQ96NL0 473 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 TOX2Q96NM4 488 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 VIPAS39Q9H9C1 493 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 FAM114A2Q9NRY5 505 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 DCDC2CA8MYV0 355 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 TP73O15350 636 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 LIASO43766 372 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 PRPSAP2O60256 369 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 ECEL1O95672 775 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 BDNFP23560 247 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 CETN2P41208 172 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 TKTL1P51854 596 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 PITX1P78337 314 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-202ENST00000372405 KRT17Q04695 432 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 ODF2Q5BJF6 829 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 EFHC1Q5JVL4 640 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 C1orf53Q5VUE5 145 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 BHLHA9Q7RTU4 235 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 KCTD6Q8NC69 237 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.42□□□□□ -0.13e-9■■■■■ 80.2
PTPRF-202ENST00000372405 ULBP1Q9BZM6 244 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 LRRC4Q9HBW1 653 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.42□□□□□ -0.1
PTPRF-202ENST00000372405 GPATCH2LQ9NWQ4 482 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 RASAL2Q9UJF2 1139 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 TBX21Q9UL17 535 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 DNPEPQ9ULA0 475 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 EFR3BQ9Y2G0 817 aa14.42□□□□□ -0.1
PTPRF-202ENST00000372405 COL4A4P53420 1690 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-202ENST00000372405 H3BQF6 201 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 HSF2BPO75031 334 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 FYNP06241 537 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 MATKP42679 507 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 BCAR1P56945 870 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 YWHAHQ04917 246 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-202ENST00000372405 MMRN1Q13201 1228 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 CA9Q16790 459 aa14.41□□□□□ -0.1
PTPRF-202ENST00000372405 ZC3H12AQ5D1E8 599 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms