RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 ADCY1Q08828 1119 aa19■□□□□ 0.63
VIM-201ENST00000224237 AENQ8WTP8 325 aaKnown RBP19■□□□□ 0.63
VIM-201ENST00000224237 CASKIN2Q8WXE0 1202 aa19■□□□□ 0.63
VIM-201ENST00000224237 CSNK1G1Q9HCP0 422 aa19■□□□□ 0.63
VIM-201ENST00000224237 PCSK1NQ9UHG2 260 aa19■□□□□ 0.63
VIM-201ENST00000224237 SYN3O14994 580 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 PRPSAP2O60256 369 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 FBXO21O94952 628 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 ITGB8P26012 769 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CDKN2BP42772 138 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 ATP11AP98196 1134 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 KCNT1Q5JUK3 1230 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 SH3PXD2AQ5TCZ1 1133 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 TTC27Q6P3X3 843 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 EMBQ6PCB8 327 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 HDXQ7Z353 690 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 ANKS1BQ7Z6G8 1248 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 JAMLQ86YT9 394 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CCDC105Q8IYK2 499 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 FAM172AQ8WUF8 416 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.99■□□□□ 0.63
VIM-201ENST00000224237 SEC14L1Q92503 715 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 ACSF2Q96CM8 615 aaPredicted RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 FUT8Q9BYC5 575 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 NGRNQ9NPE2 291 aaKnown RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 ADAM28Q9UKQ2 775 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 EFR3BQ9Y2G0 817 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 hCG_1818297A0A087WSY0 165 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 SPDYE4A6NLX3 237 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 NRP1O14786 923 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 OAZ2O95190 189 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 ALDH2P05091 517 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 RFC2P35250 354 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 PTGIRP43119 386 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CARSP49589 748 aaKnown RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 TKTL1P51854 596 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CBX1P83916 185 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 RAB41Q5JT25 222 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CNKSR3Q6P9H4 555 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.99■□□□□ 0.632e-10■■■■■ 43.7
VIM-201ENST00000224237 ZMIZ2Q8NF64 920 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 CMASQ8NFW8 434 aaPredicted RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 IFT81Q8WYA0 676 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 SLCO2A1Q92959 643 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 C11orf84Q9BUA3 381 aaPredicted RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 DDX23Q9BUQ8 820 aaKnown RBP18.99■□□□□ 0.63
VIM-201ENST00000224237 COLEC11Q9BWP8 271 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 DCLK3Q9C098 648 aa18.99■□□□□ 0.63
VIM-201ENST00000224237 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.99■□□□□ 0.63
VIM-201ENST00000224237 C3orf70A6NLC5 250 aaPredicted RBP18.98■□□□□ 0.63
VIM-201ENST00000224237 KDELR1P24390 212 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 IKBKEQ14164 716 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 CCNG2Q16589 344 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 KAZNQ674X7 775 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 C4orf50Q6ZRC1 276 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 LRRC43Q8N309 656 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 C1orf54Q8WWF1 131 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 FAM149B1Q96BN6 582 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 PEBP4Q96S96 227 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 TMEM209Q96SK2 561 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 KCNK16Q96T55 309 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 TBCBQ99426 244 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 ERP44Q9BS26 406 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 TMEM175Q9BSA9 504 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 DMAP1Q9NPF5 467 aaPredicted RBP18.98■□□□□ 0.63
VIM-201ENST00000224237 CNGB3Q9NQW8 809 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 PRDM5Q9NQX1 630 aaPredicted RBP18.98■□□□□ 0.63
VIM-201ENST00000224237 FAM114A2Q9NRY5 505 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 CHST7Q9NS84 486 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 FEZ2Q9UHY8 353 aaPredicted RBP18.98■□□□□ 0.63
VIM-201ENST00000224237 NFU1Q9UMS0 254 aa18.98■□□□□ 0.63
VIM-201ENST00000224237 FNDC1Q4ZHG4 1894 aaPredicted RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 TBKBP1A7MCY6 615 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 DAB1O75553 588 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 ECEL1O95672 775 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 KRT10P13645 584 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 BDNFP23560 247 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 MATKP42679 507 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 CACNA2D1P54289 1103 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 BCAR1P56945 870 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 YWHAZP63104 245 aaKnown RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 BOLA3Q53S33 107 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 KCTD6Q8NC69 237 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 GRK7Q8WTQ7 553 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 HSPH1Q92598 858 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 CENPIQ92674 756 aaPredicted RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 TRIM51Q9BSJ1 452 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 PNPLA8Q9NP80 782 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TMEM30AQ9NV96 361 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TMLHEQ9NVH6 421 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 FAN1Q9Y2M0 1017 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 PTPRDP23468 1912 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TRIM43BA6NCK2 446 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 HHLA1C9JL84 531 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 SASH3O75995 380 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 UPP2O95045 317 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TNNT3P45378 269 aaPredicted RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 NDUFV1P49821 464 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 HDAC4P56524 1084 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TAZQ16635 292 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms