RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP60YAR002W VAM10Q08474 114 aa2.46□□□□□ -2.02
NUP60YAR002W ADH1P00330 348 aaKnown RBP2.45□□□□□ -2.02
NUP60YAR002W MID2P36027 376 aa2.45□□□□□ -2.02
NUP60YAR002W YBR219CP38317 127 aa2.45□□□□□ -2.02
NUP60YAR002W SGF11Q03067 99 aa2.45□□□□□ -2.02
NUP60YAR002W PPT2Q12036 173 aa2.45□□□□□ -2.02
NUP60YAR002W CPR1P14832 162 aaKnown RBP2.44□□□□□ -2.02
NUP60YAR002W NHP2P32495 156 aaPredicted RBP2.44□□□□□ -2.02
NUP60YAR002W NRG2P38082 220 aa2.44□□□□□ -2.02
NUP60YAR002W COX14P39103 70 aa2.44□□□□□ -2.02
NUP60YAR002W UTP20P35194 2493 aaKnown RBP2.44□□□□□ -2.02
NUP60YAR002W RPR2P40571 144 aa2.43□□□□□ -2.02
NUP60YAR002W RUB1Q03919 77 aa2.43□□□□□ -2.02
NUP60YAR002W ENV10Q99382 181 aa2.43□□□□□ -2.02
NUP60YAR002W ARO2P28777 376 aaKnown RBP2.42□□□□□ -2.02
NUP60YAR002W TOA2P32774 122 aa2.42□□□□□ -2.02
NUP60YAR002W YHR130CP38834 111 aa2.42□□□□□ -2.02
NUP60YAR002W CWP2P43497 92 aa2.42□□□□□ -2.02
NUP60YAR002W RDS3Q06835 107 aaPredicted RBP2.42□□□□□ -2.02
NUP60YAR002W YMR230W-AQ3E7B5 62 aa2.42□□□□□ -2.02
NUP60YAR002W ERG28P40030 148 aa2.42□□□□□ -2.02
NUP60YAR002W YIA6P40556 373 aa2.42□□□□□ -2.02
NUP60YAR002W EOS1P53938 366 aa2.42□□□□□ -2.02
NUP60YAR002W HAL1Q01766 294 aa2.42□□□□□ -2.02
NUP60YAR002W YPR010C-AA5Z2X5 72 aa2.41□□□□□ -2.02
NUP60YAR002W YAL065CO13511 128 aa2.41□□□□□ -2.02
NUP60YAR002W RGM1Q00453 211 aa2.41□□□□□ -2.02
NUP60YAR002W YMR320WQ04897 101 aa2.41□□□□□ -2.02
NUP60YAR002W HPA2Q06592 156 aa2.41□□□□□ -2.02
NUP60YAR002W YPL257WQ08974 193 aa2.41□□□□□ -2.02
NUP60YAR002W YMR175W-AQ3E766 64 aa2.41□□□□□ -2.02
NUP60YAR002W SLO1Q3E784 85 aa2.41□□□□□ -2.02
NUP60YAR002W RPL33AP05744 107 aaKnown RBP2.4□□□□□ -2.03
NUP60YAR002W COX10P21592 462 aa2.4□□□□□ -2.03
NUP60YAR002W RPC10P40422 70 aa2.4□□□□□ -2.03
NUP60YAR002W RPL33BP41056 107 aaKnown RBP2.4□□□□□ -2.03
NUP60YAR002W YLL006W-AQ3E814 58 aa2.4□□□□□ -2.03
NUP60YAR002W YOR020W-AQ3E824 90 aa2.4□□□□□ -2.03
NUP60YAR002W STF1P01098 86 aa2.39□□□□□ -2.03
NUP60YAR002W AUA1P32450 94 aa2.39□□□□□ -2.03
NUP60YAR002W HUR1P45820 110 aa2.39□□□□□ -2.03
NUP60YAR002W OST2P46964 130 aa2.39□□□□□ -2.03
NUP60YAR002W SPC1P46965 94 aa2.39□□□□□ -2.03
NUP60YAR002W YDL241WQ07738 123 aa2.39□□□□□ -2.03
NUP60YAR002W RPA12P32529 125 aaKnown RBP2.39□□□□□ -2.03
NUP60YAR002W MRPL24P36525 258 aaPredicted RBP2.39□□□□□ -2.03
NUP60YAR002W YBL081WP38180 368 aaKnown RBP2.39□□□□□ -2.03
NUP60YAR002W ATX1P38636 73 aa2.39□□□□□ -2.03
NUP60YAR002W DSE2P38844 325 aa2.39□□□□□ -2.03
NUP60YAR002W YDR115WQ04598 105 aa2.39□□□□□ -2.03
NUP60YAR002W YLL066W-BQ8TGJ7 56 aa2.39□□□□□ -2.03
NUP60YAR002W DYN1P36022 4092 aa2.38□□□□□ -2.03
NUP60YAR002W YAL064WP39711 94 aa2.38□□□□□ -2.03
NUP60YAR002W ABF2Q02486 183 aa2.38□□□□□ -2.03
NUP60YAR002W PBA1Q05778 276 aa2.38□□□□□ -2.03
NUP60YAR002W YOR034C-AQ3E735 80 aa2.38□□□□□ -2.03
NUP60YAR002W YPL229WQ99395 206 aa2.38□□□□□ -2.03
NUP60YAR002W RTC6O14464 93 aa2.37□□□□□ -2.03
NUP60YAR002W RPL29P05747 59 aaPredicted RBP2.37□□□□□ -2.03
NUP60YAR002W SVP26P38869 228 aa2.37□□□□□ -2.03
NUP60YAR002W AIM19P40502 157 aa2.37□□□□□ -2.03
NUP60YAR002W MVB12P42939 101 aa2.37□□□□□ -2.03
NUP60YAR002W KNH1P50112 268 aa2.37□□□□□ -2.03
NUP60YAR002W IRC21Q04772 201 aa2.37□□□□□ -2.03
NUP60YAR002W YIL002W-AQ3E7Z5 69 aa2.37□□□□□ -2.03
NUP60YAR002W YLR236CA0A023PZG4 107 aa2.36□□□□□ -2.03
NUP60YAR002W AQY2P0CD90 149 aa2.36□□□□□ -2.03
NUP60YAR002W INO4P13902 151 aa2.36□□□□□ -2.03
NUP60YAR002W YRA2P36036 203 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
NUP60YAR002W YFL067WP43537 175 aa2.36□□□□□ -2.03
NUP60YAR002W SMD1Q02260 146 aaPredicted RBP2.36□□□□□ -2.03
NUP60YAR002W YCR085WP25650 117 aa2.35□□□□□ -2.03
NUP60YAR002W MSA2P36157 363 aa2.35□□□□□ -2.03
NUP60YAR002W YFL019CP43576 117 aa2.35□□□□□ -2.03
NUP60YAR002W ICY1Q04329 127 aa2.35□□□□□ -2.03
NUP60YAR002W RRT15Q3E811 62 aa2.35□□□□□ -2.03
NUP60YAR002W YBL039W-BP0C268 59 aa2.35□□□□□ -2.03
NUP60YAR002W ISD11Q6Q560 94 aa2.35□□□□□ -2.03
NUP60YAR002W YAR023CD6VPM8 179 aa2.34□□□□□ -2.04
NUP60YAR002W PBI2P0CT04 75 aaKnown RBP2.34□□□□□ -2.04
NUP60YAR002W UBC4P15731 148 aa2.34□□□□□ -2.04
NUP60YAR002W YJR107C-AP0CT86 78 aa2.33□□□□□ -2.04
NUP60YAR002W SKI6P46948 246 aaPredicted RBP2.33□□□□□ -2.04
NUP60YAR002W MPC3P53311 146 aa2.33□□□□□ -2.04
NUP60YAR002W YDR381C-AQ3E6R5 114 aa2.33□□□□□ -2.04
NUP60YAR002W YAL063C-AQ3E791 96 aa2.33□□□□□ -2.04
NUP60YAR002W YER078W-AQ3E7A2 54 aa2.33□□□□□ -2.04
NUP60YAR002W RPL26AP05743 127 aaKnown RBP2.32□□□□□ -2.04
NUP60YAR002W YFL065CP43539 102 aa2.32□□□□□ -2.04
NUP60YAR002W IGD1P43598 195 aa2.32□□□□□ -2.04
NUP60YAR002W RPL26BP53221 127 aaKnown RBP2.32□□□□□ -2.04
NUP60YAR002W SNA2P56508 79 aa2.32□□□□□ -2.04
NUP60YAR002W YPR203WQ08994 102 aa2.32□□□□□ -2.04
NUP60YAR002W HHF1P02309 103 aaKnown RBP2.31□□□□□ -2.04
NUP60YAR002W SMP1P38128 452 aa2.31□□□□□ -2.04
NUP60YAR002W Q0032Q9ZZX7 96 aa2.31□□□□□ -2.04
NUP60YAR002W ATP18P81450 59 aa2.31□□□□□ -2.04
NUP60YAR002W YFL041W-AQ3E817 63 aa2.31□□□□□ -2.04
NUP60YAR002W YLR307C-AQ3E825 87 aa2.31□□□□□ -2.04
NUP60YAR002W KRE1P17260 313 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 28 ms