RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ABLIM1O14639 778 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PRKAB2O43741 272 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 VCLP18206 1134 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SAT1P21673 171 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 NCKAP1LP55160 1127 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 NKX1-1Q15270 411 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 FAM110CQ1W6H9 321 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 GRTP1Q5TC63 336 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 CYP4Z1Q86W10 505 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PLD3Q8IV08 490 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SLC26A7Q8TE54 656 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 BSNDQ8WZ55 320 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ARL8AQ96BM9 186 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TIFAQ96CG3 184 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 CCT8L2Q96SF2 557 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZSWIM1Q9BR11 485 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZC4H2Q9NQZ6 224 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ATRNO75882 1429 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 FRMPD4Q14CM0 1322 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ENO4A6NNW6 628 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SOAT2O75908 522 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SYF2O95926 243 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 IGKV5-2P06315 115 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 STAT5BP51692 787 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 NRLP54845 237 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 RTP1P59025 263 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 IL1RL1Q01638 556 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PDAP1Q13442 181 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SLC30A9Q6PML9 568 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ATG9AQ7Z3C6 839 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 MTMR14Q8NCE2 650 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 FEZF2Q8TBJ5 459 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 DCUN1D1Q96GG9 259 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 KCNF1Q9H3M0 494 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TBC1D13Q9NVG8 400 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 MRPS23Q9Y3D9 190 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 POLRMTO00411 1230 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PJA2O43164 708 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SERPINI2O75830 405 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 RPA1P27694 616 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TYK2P29597 1187 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 POLD2P49005 469 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 CARSP49589 748 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 HIRAP54198 1017 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PTK7Q13308 1070 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF235Q14590 738 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TMEM132DQ14C87 1099 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 BOLA3Q53S33 107 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF544Q6NX49 715 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 UNC45BQ8IWX7 931 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ATP6V0D2Q8N8Y2 350 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 MXRA8Q9BRK3 442 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 FAM213AQ9BRX8 229 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 RNF186Q9NXI6 227 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TBK1Q9UHD2 729 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 AOC2O75106 756 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 RASSF9O75901 435 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ETFBP38117 255 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 CDK7P50613 346 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 SPANXN3Q5MJ09 141 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF280DQ6N043 979 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 CAPN12Q6ZSI9 719 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 RASGRP4Q8TDF6 673 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 TRAPPC9Q96Q05 1148 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 GEMIN8Q9NWZ8 242 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 DDX20Q9UHI6 824 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 ADAM28Q9UKQ2 775 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PAIP2BQ9ULR5 123 aaKnown RBP8.1□□□□□ -1.11
VPS13D-211ENST00000543710 PPP1R3GB7ZBB8 358 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 MLYCDO95822 493 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 F9P00740 461 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 MAP4P27816 1152 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NR2C2P49116 596 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST2H2ACQ16777 129 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 AGAP9Q5VTM2 703 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PCNX4Q63HM2 1172 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HIST2H2AA3Q6FI13 130 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 RWDD4Q6NW29 188 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 FAM43BQ6ZT52 329 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 LCA5Q86VQ0 697 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PASD1Q8IV76 773 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TC2NQ8N9U0 490 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ANKLE1Q8NAG6 615 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ASIC4Q96FT7 647 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PPP1R16BQ96T49 567 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 VPS11Q9H270 941 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 STMN3Q9NZ72 180 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 MON2Q7Z3U7 1717 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 CFLARO15519 480 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 TREHO43280 583 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 MYL4P12829 197 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 ATP1A3P13637 1013 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 NQO1P15559 274 aaKnown RBP8.09□□□□□ -1.11
VPS13D-211ENST00000543710 PCSK1P29120 753 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 HMOX2P30519 316 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 AXLP30530 894 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 MAGEA4P43358 317 aa8.09□□□□□ -1.11
VPS13D-211ENST00000543710 OAZ1P54368 228 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms