RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FBXL5Q9UKA1 691 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 GTF3C4Q9UKN8 822 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 TBX21Q9UL17 535 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 B4GALT3O60512 393 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 TIMP1P01033 207 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 LILRA4P59901 499 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 GPNMBQ14956 572 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 NUGGCQ68CJ6 796 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD33Q7Z3H0 272 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 MYLK4Q86YV6 388 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 PRMT1Q99873 361 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 FTHL17Q9BXU8 183 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ECT2Q9H8V3 914 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 INTS9Q9NV88 658 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 SLC38A7Q9NVC3 462 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 CTTNBP2NLQ9P2B4 639 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ITGA11Q9UKX5 1188 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 C2CD2Q9Y426 696 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 MYH10P35580 1976 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ALDH2P05091 517 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 CPB1P15086 417 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 CYP11B1P15538 503 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 AMPD2Q01433 879 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 FPGSQ05932 587 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TMED1Q13445 227 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 EMBQ6PCB8 327 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 C1orf131Q8NDD1 294 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 GPR152Q8TDT2 470 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 HTATIP2Q9BUP3 242 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 RHOBTB2Q9BYZ6 727 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TTYH3Q9C0H2 523 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 RGS18Q9NS28 235 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 DDX43Q9NXZ2 648 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 GIT1Q9Y2X7 761 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 GTPBP10A4D1E9 387 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD62A6NC57 917 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 FOXO6A8MYZ6 492 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 DAPK3O43293 454 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 UBOX5O94941 541 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 AMHP03971 560 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 RPLP2P05387 115 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SPATA31D3P0C874 917 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 COL6A1P12109 1028 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TBXAS1P24557 533 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TPP2P29144 1249 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 VPS41P49754 854 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 AP3M2P53677 418 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SV2CQ496J9 727 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TIGD5Q53EQ6 642 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SDHAF4Q5VUM1 108 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ALS2CLQ60I27 953 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TRAF7Q6Q0C0 670 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SPATA31D4Q6ZUB0 917 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 METTL23Q86XA0 190 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 CCDC51Q96ER9 411 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 AGPAT1Q99943 283 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ABI2Q9NYB9 513 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 AMACRQ9UHK6 382 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SNX12Q9UMY4 172 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 DPPA5A6NC42 116 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 MAPK13O15264 365 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 P4HA2O15460 535 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 FTLP02792 175 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 UBTFL6P0CB48 400 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SKIP12755 728 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 MYOGP15173 224 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 NSFP46459 744 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TUSC3Q13454 348 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 MDH1BQ5I0G3 518 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD20A2Q5SQ80 823 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD20A1Q5TYW2 823 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKRD20A3Q5VUR7 823 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ARMCX6Q7L4S7 300 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SPATS2Q86XZ4 545 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 GSTCDQ8NEC7 633 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 EZH1Q92800 747 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM149B1Q96BN6 582 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ZNF653Q96CK0 615 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 BTBD6Q96KE9 485 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 DNAJC7Q99615 494 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 SH3GL2Q99962 352 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 PLEKHA5Q9HAU0 1116 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 ETNK1Q9HBU6 452 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 HESX1Q9UBX0 185 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 PCDHA13Q9Y5I0 950 aa9.1□□□□□ -0.95
LIMCH1-209ENST00000509277 TLL1O43897 1013 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 SHOX2O60902 331 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 LCP1P13796 627 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ATP2A2P16615 1042 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 SERPINB4P48594 390 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 PLTPP55058 493 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 MFSD5Q6N075 450 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 TMEM173Q86WV6 379 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CD302Q8IX05 232 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 LRRC34Q8IZ02 419 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 RNF10Q8N5U6 811 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 AENQ8WTP8 325 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms