RNA–Protein interactions for RNA: YOR339C

UBC11, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC11, Length 471 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC11	YOR339C	ADH2	P00331	348 aa	Known RBP	4.16	□□□□□ -1.74
UBC11	YOR339C	RPL27B	P0C2H7	136 aa	Known RBP	4.16	□□□□□ -1.74
UBC11	YOR339C	MRP49	P32388	137 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	PAU16	P35994	123 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	AIM29	P36154	155 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	YIL059C	P40520	121 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	PKR1	Q03880	122 aa	Known RBP	4.16	□□□□□ -1.74
UBC11	YOR339C	YLR112W	Q12130	139 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	YMR122W-A	Q3E842	84 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	COA6	Q3E846	104 aa		4.16	□□□□□ -1.74
UBC11	YOR339C	TRP1	P00912	224 aa		4.15	□□□□□ -1.75
UBC11	YOR339C	FYV4	P38783	130 aa	Predicted RBP	4.15	□□□□□ -1.75
UBC11	YOR339C	URM1	P40554	99 aa	Predicted RBP	4.15	□□□□□ -1.75
UBC11	YOR339C	SPC1	P46965	94 aa		4.15	□□□□□ -1.75
UBC11	YOR339C	ERI1	P62651	68 aa	Known RBP	4.15	□□□□□ -1.75
UBC11	YOR339C	COA3	Q3E7B2	85 aa		4.15	□□□□□ -1.75
UBC11	YOR339C	YMR103C	Q04436	120 aa		4.14	□□□□□ -1.75
UBC11	YOR339C	TPT1	Q12272	230 aa	Known RBP	4.14	□□□□□ -1.75
UBC11	YOR339C	RPL33A	P05744	107 aa	Known RBP	4.13	□□□□□ -1.75
UBC11	YOR339C	APS1	P35181	156 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	YEL008W	P40001	126 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	YER085C	P40058	173 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	RPL33B	P41056	107 aa	Known RBP	4.13	□□□□□ -1.75
UBC11	YOR339C	PBA1	Q05778	276 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	CNL1	Q06333	122 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	SCS22	Q6Q595	175 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	YLL066W-B	Q8TGJ7	56 aa		4.13	□□□□□ -1.75
UBC11	YOR339C	RPL31A	P0C2H8	113 aa	Known RBP	4.12	□□□□□ -1.75
UBC11	YOR339C	YMR320W	Q04897	101 aa		4.12	□□□□□ -1.75
UBC11	YOR339C	YCL021W-A	Q96VH3	125 aa		4.12	□□□□□ -1.75
UBC11	YOR339C	DIF1	O13577	133 aa		4.11	□□□□□ -1.75
UBC11	YOR339C	SEC11	P15367	167 aa		4.11	□□□□□ -1.75
UBC11	YOR339C	ATP15	P21306	62 aa		4.11	□□□□□ -1.75
UBC11	YOR339C	YKL070W	P36087	169 aa		4.11	□□□□□ -1.75
UBC11	YOR339C	HAC1	P41546	238 aa		4.11	□□□□□ -1.75
UBC11	YOR339C	YLR050C	Q12155	161 aa	Known RBP	4.11	□□□□□ -1.75
UBC11	YOR339C	RTC6	O14464	93 aa		4.1	□□□□□ -1.75
UBC11	YOR339C	SVP26	P38869	228 aa		4.1	□□□□□ -1.75
UBC11	YOR339C	ERG28	P40030	148 aa		4.1	□□□□□ -1.75
UBC11	YOR339C	RRT15	Q3E811	62 aa		4.1	□□□□□ -1.75
UBC11	YOR339C	YPR010C-A	A5Z2X5	72 aa		4.09	□□□□□ -1.75
UBC11	YOR339C	FUN14	P18411	198 aa		4.09	□□□□□ -1.75
UBC11	YOR339C	YBR219C	P38317	127 aa		4.09	□□□□□ -1.75
UBC11	YOR339C	YGL230C	P53074	147 aa		4.09	□□□□□ -1.75
UBC11	YOR339C	YDR115W	Q04598	105 aa		4.09	□□□□□ -1.75
UBC11	YOR339C	YDL022C-A	P0C5L6	82 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	MSL1	P40567	111 aa	Predicted RBP	4.08	□□□□□ -1.76
UBC11	YOR339C	LSM8	P47093	109 aa	Known RBP	4.08	□□□□□ -1.76
UBC11	YOR339C	CGR1	P53188	120 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	AIM11	P87275	137 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	YMR295C	Q03559	197 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	BET5	Q03630	159 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	YPR195C	Q06594	109 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	YPL261C	Q08976	102 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	YDL157C	Q12082	118 aa		4.08	□□□□□ -1.76
UBC11	YOR339C	DFM1	Q12743	341 aa	Known RBP	4.08	□□□□□ -1.76
UBC11	YOR339C	RPL11A	P0C0W9	174 aa	Known RBP	4.07	□□□□□ -1.76
UBC11	YOR339C	MRPL44	P19956	98 aa		4.07	□□□□□ -1.76
UBC11	YOR339C	YLR194C	Q05777	254 aa		4.07	□□□□□ -1.76
UBC11	YOR339C	NAT5	Q08689	176 aa		4.07	□□□□□ -1.76
UBC11	YOR339C	RPL11B	Q3E757	174 aa	Predicted RBP	4.07	□□□□□ -1.76
UBC11	YOR339C	ENV10	Q99382	181 aa		4.07	□□□□□ -1.76
UBC11	YOR339C	YAR029W	P39549	74 aa		4.06	□□□□□ -1.76
UBC11	YOR339C	FYV7	Q12247	151 aa		4.06	□□□□□ -1.76
UBC11	YOR339C	YKL044W	P36092	106 aa		4.05	□□□□□ -1.76
UBC11	YOR339C	YKR041W	P36134	250 aa		4.05	□□□□□ -1.76
UBC11	YOR339C	RPL32	P38061	130 aa	Known RBP	4.05	□□□□□ -1.76
UBC11	YOR339C	YBL081W	P38180	368 aa	Known RBP	4.05	□□□□□ -1.76
UBC11	YOR339C	SHU1	P38751	150 aa		4.05	□□□□□ -1.76
UBC11	YOR339C	YAL064W	P39711	94 aa		4.05	□□□□□ -1.76
UBC11	YOR339C	RPC10	P40422	70 aa		4.05	□□□□□ -1.76
UBC11	YOR339C	SCM4	P32564	187 aa		4.04	□□□□□ -1.76
UBC11	YOR339C	YEL067C	P39978	195 aa		4.04	□□□□□ -1.76
UBC11	YOR339C	YPL073C	P40323	161 aa		4.04	□□□□□ -1.76
UBC11	YOR339C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
UBC11	YOR339C	YAR023C	D6VPM8	179 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	RPL18A	P0CX49	186 aa	Known RBP	4.03	□□□□□ -1.76
UBC11	YOR339C	RPL18B	P0CX50	186 aa	Known RBP	4.03	□□□□□ -1.76
UBC11	YOR339C	ANB1	P19211	157 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	YCR007C	P25354	239 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	PEX17	P40155	199 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	CIN5	P40917	295 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	MRPS12	P53732	153 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	YMR175W-A	Q3E766	64 aa		4.03	□□□□□ -1.76
UBC11	YOR339C	YAL065C	O13511	128 aa		4.02	□□□□□ -1.77
UBC11	YOR339C	ATP5	P09457	212 aa		4.02	□□□□□ -1.77
UBC11	YOR339C	COX14	P39103	70 aa		4.02	□□□□□ -1.77
UBC11	YOR339C	YNR077C	P53758	84 aa		4.02	□□□□□ -1.77
UBC11	YOR339C	RPL28	P02406	149 aa	Known RBP	4.01	□□□□□ -1.77
UBC11	YOR339C	VTC1	P40046	129 aa	RIP-Chip data	4.01	□□□□□ -1.77	not detected
UBC11	YOR339C	TOA2	P32774	122 aa		4	□□□□□ -1.77
UBC11	YOR339C	RPF1	P38805	295 aa	Known RBP	4	□□□□□ -1.77
UBC11	YOR339C	SAE3	P89114	91 aa		4	□□□□□ -1.77
UBC11	YOR339C	YDL085C-A	Q3E7B7	68 aa	Known RBP	4	□□□□□ -1.77
UBC11	YOR339C	IGO2	Q9P305	131 aa		4	□□□□□ -1.77
UBC11	YOR339C	ADH1	P00330	348 aa	Known RBP	3.99	□□□□□ -1.77
UBC11	YOR339C	QCR8	P08525	94 aa		3.99	□□□□□ -1.77
UBC11	YOR339C	GAT4	P40569	121 aa		3.99	□□□□□ -1.77
UBC11	YOR339C	YFR057W	P43625	151 aa		3.99	□□□□□ -1.77
UBC11	YOR339C	YNL190W	P53872	204 aa		3.99	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 37.6 ms