RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W RPL16AP26784 199 aaKnown RBP4.31□□□□□ -1.72
CAF40YNL288W GSP1P32835 219 aaKnown RBP4.31□□□□□ -1.72
CAF40YNL288W GSP2P32836 220 aaKnown RBP4.31□□□□□ -1.72
CAF40YNL288W YNL200CP40165 246 aaKnown RBP4.31□□□□□ -1.72
CAF40YNL288W RPL33BP41056 107 aaKnown RBP4.31□□□□□ -1.72
CAF40YNL288W ERV14P53173 138 aa4.31□□□□□ -1.72
CAF40YNL288W PBA1Q05778 276 aa4.31□□□□□ -1.72
CAF40YNL288W YOR008C-AQ3E7B9 74 aa4.31□□□□□ -1.72
CAF40YNL288W HTL1Q9URQ5 78 aa4.31□□□□□ -1.72
CAF40YNL288W TRP1P00912 224 aa4.3□□□□□ -1.72
CAF40YNL288W YIL059CP40520 121 aa4.3□□□□□ -1.72
CAF40YNL288W YJR146WP47174 117 aa4.3□□□□□ -1.72
CAF40YNL288W ATP16Q12165 160 aa4.3□□□□□ -1.72
CAF40YNL288W YLL066W-BQ8TGJ7 56 aa4.3□□□□□ -1.72
CAF40YNL288W ADH2P00331 348 aaKnown RBP4.29□□□□□ -1.72
CAF40YNL288W PRE1P22141 198 aaKnown RBP4.29□□□□□ -1.72
CAF40YNL288W YBR209WP38311 105 aa4.29□□□□□ -1.72
CAF40YNL288W YAR029WP39549 74 aa4.29□□□□□ -1.72
CAF40YNL288W ERG28P40030 148 aa4.29□□□□□ -1.72
CAF40YNL288W YER134CP40081 178 aa4.29□□□□□ -1.72
CAF40YNL288W CMC2Q3E7A4 109 aa4.29□□□□□ -1.72
CAF40YNL288W AIM29P36154 155 aa4.28□□□□□ -1.72
CAF40YNL288W YDR042CQ03205 200 aa4.28□□□□□ -1.72
CAF40YNL288W PKR1Q03880 122 aaKnown RBP4.28□□□□□ -1.72
CAF40YNL288W HMRA2P0CY13 119 aa4.27□□□□□ -1.73
CAF40YNL288W SSS1P35179 80 aa4.27□□□□□ -1.73
CAF40YNL288W YGL088WP53151 121 aa4.27□□□□□ -1.73
CAF40YNL288W CUE4Q04201 117 aaPredicted RBP4.27□□□□□ -1.73
CAF40YNL288W RPL27BP0C2H7 136 aaKnown RBP4.26□□□□□ -1.73
CAF40YNL288W SVP26P38869 228 aa4.26□□□□□ -1.73
CAF40YNL288W POP3P53833 195 aaPredicted RBP4.26□□□□□ -1.73
CAF40YNL288W YDR115WQ04598 105 aa4.26□□□□□ -1.73
CAF40YNL288W YMR320WQ04897 101 aa4.26□□□□□ -1.73
CAF40YNL288W YCL021W-AQ96VH3 125 aa4.26□□□□□ -1.73
CAF40YNL288W YEL008WP40001 126 aa4.25□□□□□ -1.73
CAF40YNL288W OST3P48439 350 aa4.25□□□□□ -1.73
CAF40YNL288W YLR112WQ12130 139 aa4.25□□□□□ -1.73
CAF40YNL288W COA3Q3E7B2 85 aa4.25□□□□□ -1.73
CAF40YNL288W COA6Q3E846 104 aa4.25□□□□□ -1.73
CAF40YNL288W ENV10Q99382 181 aa4.25□□□□□ -1.73
CAF40YNL288W YER085CP40058 173 aa4.24□□□□□ -1.73
CAF40YNL288W CNL1Q06333 122 aa4.24□□□□□ -1.73
CAF40YNL288W YPR195CQ06594 109 aa4.24□□□□□ -1.73
CAF40YNL288W RPL31AP0C2H8 113 aaKnown RBP4.23□□□□□ -1.73
CAF40YNL288W ANB1P19211 157 aa4.23□□□□□ -1.73
CAF40YNL288W APS1P35181 156 aa4.23□□□□□ -1.73
CAF40YNL288W PAU16P35994 123 aa4.23□□□□□ -1.73
CAF40YNL288W BET5Q03630 159 aa4.23□□□□□ -1.73
CAF40YNL288W YMR103CQ04436 120 aa4.23□□□□□ -1.73
CAF40YNL288W YLR050CQ12155 161 aaKnown RBP4.23□□□□□ -1.73
CAF40YNL288W YPL229WQ99395 206 aa4.23□□□□□ -1.73
CAF40YNL288W YKL070WP36087 169 aa4.22□□□□□ -1.73
CAF40YNL288W MRPL11P36521 249 aaPredicted RBP4.22□□□□□ -1.73
CAF40YNL288W FYV4P38783 130 aaPredicted RBP4.22□□□□□ -1.73
CAF40YNL288W UIP3P39547 235 aa4.22□□□□□ -1.73
CAF40YNL288W DFM1Q12743 341 aaKnown RBP4.22□□□□□ -1.73
CAF40YNL288W YAR023CD6VPM8 179 aa4.21□□□□□ -1.74
CAF40YNL288W YBR219CP38317 127 aa4.21□□□□□ -1.74
CAF40YNL288W RPC10P40422 70 aa4.21□□□□□ -1.74
CAF40YNL288W YLR194CQ05777 254 aa4.21□□□□□ -1.74
CAF40YNL288W TPT1Q12272 230 aaKnown RBP4.21□□□□□ -1.74
CAF40YNL288W YMR175W-AQ3E766 64 aa4.21□□□□□ -1.74
CAF40YNL288W RRT15Q3E811 62 aa4.21□□□□□ -1.74
CAF40YNL288W YIL134C-AQ45U18 67 aa4.21□□□□□ -1.74
CAF40YNL288W ATP15P21306 62 aa4.2□□□□□ -1.74
CAF40YNL288W GAT4P40569 121 aa4.2□□□□□ -1.74
CAF40YNL288W SEN15Q04675 128 aa4.2□□□□□ -1.74
CAF40YNL288W YAL064WP39711 94 aa4.19□□□□□ -1.74
CAF40YNL288W YMR295CQ03559 197 aa4.19□□□□□ -1.74
CAF40YNL288W CIN5P40917 295 aa4.18□□□□□ -1.74
CAF40YNL288W CGR1P53188 120 aa4.18□□□□□ -1.74
CAF40YNL288W AIM11P87275 137 aa4.18□□□□□ -1.74
CAF40YNL288W PPT2Q12036 173 aa4.18□□□□□ -1.74
CAF40YNL288W YBL081WP38180 368 aaKnown RBP4.17□□□□□ -1.74
CAF40YNL288W PEX17P40155 199 aa4.17□□□□□ -1.74
CAF40YNL288W YDL241WQ07738 123 aa4.17□□□□□ -1.74
CAF40YNL288W YDR034C-AP0C289 58 aa4.16□□□□□ -1.74
CAF40YNL288W YKL044WP36092 106 aa4.16□□□□□ -1.74
CAF40YNL288W RPL32P38061 130 aaKnown RBP4.16□□□□□ -1.74
CAF40YNL288W SHU1P38751 150 aa4.16□□□□□ -1.74
CAF40YNL288W YDR029WQ12111 104 aa4.16□□□□□ -1.74
CAF40YNL288W YAL065CO13511 128 aa4.15□□□□□ -1.75
CAF40YNL288W SEC11P15367 167 aa4.15□□□□□ -1.75
CAF40YNL288W COX14P39103 70 aa4.15□□□□□ -1.75
CAF40YNL288W VTC1P40046 129 aaRIP-Chip data4.15□□□□□ -1.75not detected
CAF40YNL288W HAC1P41546 238 aa4.15□□□□□ -1.75
CAF40YNL288W YGL230CP53074 147 aa4.15□□□□□ -1.75
CAF40YNL288W GIS2P53849 153 aaKnown RBP RIP-Chip data4.15□□□□□ -1.75not detected
CAF40YNL288W SNA2P56508 79 aa4.15□□□□□ -1.75
CAF40YNL288W LCL2Q08045 131 aa4.15□□□□□ -1.75
CAF40YNL288W YPL261CQ08976 102 aa4.15□□□□□ -1.75
CAF40YNL288W RPL18AP0CX49 186 aaKnown RBP4.14□□□□□ -1.75
CAF40YNL288W RPL18BP0CX50 186 aaKnown RBP4.14□□□□□ -1.75
CAF40YNL288W TOA2P32774 122 aa4.14□□□□□ -1.75
CAF40YNL288W QCR8P08525 94 aa4.13□□□□□ -1.75
CAF40YNL288W MRPL44P19956 98 aa4.13□□□□□ -1.75
CAF40YNL288W YKR041WP36134 250 aa4.13□□□□□ -1.75
CAF40YNL288W MSL1P40567 111 aaPredicted RBP4.13□□□□□ -1.75
CAF40YNL288W FYV7Q12247 151 aa4.13□□□□□ -1.75
CAF40YNL288W SCS22Q6Q595 175 aa4.13□□□□□ -1.75
Retrieved 100 of 5,963 RNA–protein pairs in 68 ms