RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W APS1P35181 156 aa10.27□□□□□ -0.77
DEP1YAL013W SGF11Q03067 99 aa10.27□□□□□ -0.77
DEP1YAL013W PMP3P87284 55 aa10.26□□□□□ -0.77
DEP1YAL013W SCS22Q6Q595 175 aa10.26□□□□□ -0.77
DEP1YAL013W MRP49P32388 137 aa10.25□□□□□ -0.77
DEP1YAL013W NUP42P49686 430 aaKnown RBP10.25□□□□□ -0.77
DEP1YAL013W NAT5Q08689 176 aa10.25□□□□□ -0.77
DEP1YAL013W URM1P40554 99 aaPredicted RBP10.24□□□□□ -0.77
DEP1YAL013W BET5Q03630 159 aa10.24□□□□□ -0.77
DEP1YAL013W PKR1Q03880 122 aaKnown RBP10.24□□□□□ -0.77
DEP1YAL013W TRP1P00912 224 aa10.23□□□□□ -0.77
DEP1YAL013W YKL070WP36087 169 aa10.23□□□□□ -0.77
DEP1YAL013W ATP5P09457 212 aa10.22□□□□□ -0.77
DEP1YAL013W YCR007CP25354 239 aa10.22□□□□□ -0.77
DEP1YAL013W MSL1P40567 111 aaPredicted RBP10.22□□□□□ -0.77
DEP1YAL013W YDL085C-AQ3E7B7 68 aaKnown RBP10.21□□□□□ -0.77
DEP1YAL013W YPT53P36019 220 aa10.2□□□□□ -0.78
DEP1YAL013W YKL044WP36092 106 aa10.18□□□□□ -0.78
DEP1YAL013W HAL1Q01766 294 aa10.18□□□□□ -0.78
DEP1YAL013W CRC1Q12289 327 aa10.18□□□□□ -0.78
DEP1YAL013W YMR122W-AQ3E842 84 aa10.18□□□□□ -0.78
DEP1YAL013W ADH2P00331 348 aaKnown RBP10.17□□□□□ -0.78
DEP1YAL013W YRA2P36036 203 aaKnown RBP RIP-Chip data10.16□□□□□ -0.78not detected
DEP1YAL013W ARC15P40518 154 aaRIP-Chip data10.16□□□□□ -0.78not detected
DEP1YAL013W RPL31AP0C2H8 113 aaKnown RBP10.15□□□□□ -0.78
DEP1YAL013W YDL022C-AP0C5L6 82 aa10.15□□□□□ -0.78
DEP1YAL013W AIM29P36154 155 aa10.15□□□□□ -0.78
DEP1YAL013W SAE3P89114 91 aa10.15□□□□□ -0.78
DEP1YAL013W LSO2Q3E772 92 aaKnown RBP10.15□□□□□ -0.78
DEP1YAL013W YBR209WP38311 105 aa10.14□□□□□ -0.79
DEP1YAL013W YEL008WP40001 126 aa10.14□□□□□ -0.79
DEP1YAL013W YGL088WP53151 121 aa10.14□□□□□ -0.79
DEP1YAL013W ERI1P62651 68 aaKnown RBP10.14□□□□□ -0.79
DEP1YAL013W PAU23Q07987 124 aa10.13□□□□□ -0.79
DEP1YAL013W PAU17Q12370 124 aa10.13□□□□□ -0.79
DEP1YAL013W DFM1Q12743 341 aaKnown RBP10.13□□□□□ -0.79
DEP1YAL013W YIL059CP40520 121 aa10.12□□□□□ -0.79
DEP1YAL013W ATP15P21306 62 aa10.11□□□□□ -0.79
DEP1YAL013W YPL261CQ08976 102 aa10.11□□□□□ -0.79
DEP1YAL013W AIM11P87275 137 aa10.1□□□□□ -0.79
DEP1YAL013W RPS8AP0CX39 200 aaKnown RBP10.09□□□□□ -0.79
DEP1YAL013W RPS8BP0CX40 200 aaKnown RBP10.09□□□□□ -0.79
DEP1YAL013W YLR194CQ05777 254 aa10.09□□□□□ -0.79
DEP1YAL013W YKR041WP36134 250 aa10.07□□□□□ -0.8
DEP1YAL013W YPL073CP40323 161 aa10.07□□□□□ -0.8
DEP1YAL013W YCL021W-AQ96VH3 125 aa10.07□□□□□ -0.8
DEP1YAL013W RPL32P38061 130 aaKnown RBP10.06□□□□□ -0.8
DEP1YAL013W YEL067CP39978 195 aa10.06□□□□□ -0.8
DEP1YAL013W YGL015CP33199 130 aa10.05□□□□□ -0.8
DEP1YAL013W YBR219CP38317 127 aa10.04□□□□□ -0.8
DEP1YAL013W YAR029WP39549 74 aa10.04□□□□□ -0.8
DEP1YAL013W SPC1P46965 94 aa10.04□□□□□ -0.8
DEP1YAL013W RPL33AP05744 107 aaKnown RBP10.03□□□□□ -0.8
DEP1YAL013W RPL33BP41056 107 aaKnown RBP10.03□□□□□ -0.8
DEP1YAL013W YLL066W-BQ8TGJ7 56 aa10.03□□□□□ -0.8
DEP1YAL013W ERG28P40030 148 aa10.02□□□□□ -0.81
DEP1YAL013W YER085CP40058 173 aa10.02□□□□□ -0.81
DEP1YAL013W YNR077CP53758 84 aa10.02□□□□□ -0.81
DEP1YAL013W RPR2P40571 144 aa10□□□□□ -0.81
DEP1YAL013W YMR295CQ03559 197 aa10□□□□□ -0.81
DEP1YAL013W SHU1P38751 150 aa9.99□□□□□ -0.81
DEP1YAL013W PEX17P40155 199 aa9.99□□□□□ -0.81
DEP1YAL013W MRPS12P53732 153 aa9.99□□□□□ -0.81
DEP1YAL013W IGO2Q9P305 131 aa9.98□□□□□ -0.81
DEP1YAL013W YPR010C-AA5Z2X5 72 aa9.97□□□□□ -0.81
DEP1YAL013W CIN5P40917 295 aa9.97□□□□□ -0.81
DEP1YAL013W GLC8P41818 229 aa9.97□□□□□ -0.81
DEP1YAL013W YMR320WQ04897 101 aa9.97□□□□□ -0.81
DEP1YAL013W RPF1P38805 295 aaKnown RBP9.96□□□□□ -0.82
DEP1YAL013W VTC1P40046 129 aaRIP-Chip data9.96□□□□□ -0.82not detected
DEP1YAL013W YDR115WQ04598 105 aa9.96□□□□□ -0.82
DEP1YAL013W ENV10Q99382 181 aa9.95□□□□□ -0.82
DEP1YAL013W RPL18AP0CX49 186 aaKnown RBP9.94□□□□□ -0.82
DEP1YAL013W RPL18BP0CX50 186 aaKnown RBP9.94□□□□□ -0.82
DEP1YAL013W HAP3P13434 144 aa9.93□□□□□ -0.82
DEP1YAL013W PBA1Q05778 276 aa9.93□□□□□ -0.82
DEP1YAL013W YLR363W-AQ3E747 85 aa9.93□□□□□ -0.82
DEP1YAL013W COX14P39103 70 aa9.92□□□□□ -0.82
DEP1YAL013W QCR8P08525 94 aa9.91□□□□□ -0.82
DEP1YAL013W RPC10P40422 70 aa9.91□□□□□ -0.82
DEP1YAL013W DIF1O13577 133 aa9.9□□□□□ -0.82
DEP1YAL013W RTC6O14464 93 aa9.9□□□□□ -0.82
DEP1YAL013W OXA1P39952 402 aa9.9□□□□□ -0.82
DEP1YAL013W YFR057WP43625 151 aa9.9□□□□□ -0.82
DEP1YAL013W RPL28P02406 149 aaKnown RBP9.89□□□□□ -0.83
DEP1YAL013W MHR1Q06630 226 aa9.89□□□□□ -0.83
DEP1YAL013W YMR175W-AQ3E766 64 aa9.89□□□□□ -0.83
DEP1YAL013W YAL065CO13511 128 aa9.88□□□□□ -0.83
DEP1YAL013W YML079WQ03629 201 aa9.88□□□□□ -0.83
DEP1YAL013W UGX2P32772 223 aa9.87□□□□□ -0.83
DEP1YAL013W TOA2P32774 122 aa9.87□□□□□ -0.83
DEP1YAL013W CWC27Q02770 301 aa9.86□□□□□ -0.83
DEP1YAL013W ELC1Q03071 99 aa9.86□□□□□ -0.83
DEP1YAL013W PPT2Q12036 173 aa9.85□□□□□ -0.83
DEP1YAL013W ADH1P00330 348 aaKnown RBP9.84□□□□□ -0.83
DEP1YAL013W YBL081WP38180 368 aaKnown RBP9.84□□□□□ -0.83
DEP1YAL013W YNL190WP53872 204 aa9.84□□□□□ -0.83
DEP1YAL013W YDL241WQ07738 123 aa9.83□□□□□ -0.84
DEP1YAL013W SVP26P38869 228 aa9.82□□□□□ -0.84
DEP1YAL013W YKL023C-AQ2V2P3 75 aa9.82□□□□□ -0.84
Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms