RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 MATR3P43243 847 aaKnown RBP eCLIP9.36□□□□□ -0.916e-9■■□□□ 12.9
SMAD4-215ENST00000592911 TNFRSF4P43489 277 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 LIG4P49917 911 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 UAP1L1Q3KQV9 507 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 TXNDC8Q6A555 127 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 SLFN12LQ6IEE8 588 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 ANO7Q6IWH7 933 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 PDZD3Q86UT5 571 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 DDX42Q86XP3 938 aaKnown RBP eCLIP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 C4orf32Q8N8J7 132 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 SYT2Q8N9I0 419 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 LSM14AQ8ND56 463 aaKnown RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 OTUB2Q96DC9 234 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 BICD1Q96G01 975 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 LLPHQ9BRT6 129 aaKnown RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 PI4K2AQ9BTU6 479 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 RUSC1Q9BVN2 902 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 FAM124BQ9H5Z6 455 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 CAPN10Q9HC96 672 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 ABI2Q9NYB9 513 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 GCNT4Q9P109 453 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 KIAA1522Q9P206 1035 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 CPSF3Q9UKF6 684 aaKnown RBP9.36□□□□□ -0.91
SMAD4-215ENST00000592911 KLK13Q9UKR3 277 aa9.36□□□□□ -0.91
SMAD4-215ENST00000592911 SHROOM3Q8TF72 1996 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 COL6A6A6NMZ7 2263 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 PATE3B3GLJ2 98 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 K7EQS6 105 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 ZNF217O75362 1048 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 SOAT2O75908 522 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 CKMP06732 381 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 NFICP08651 508 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 ZNF883P0CG24 379 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 BCKDHBP21953 392 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 HOXC13P31276 330 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 OPRD1P41143 372 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 MAGEA11P43364 429 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 HMGN5P82970 282 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 PSMD2Q13200 908 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 KCNB1Q14721 858 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 MAPRE1Q15691 268 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 MAP7D1Q3KQU3 841 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 SOWAHCQ53LP3 525 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 VSTM1Q6UX27 236 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 CCNI2Q6ZMN8 369 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 METTL3Q86U44 580 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 EFCAB13Q8IY85 973 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 GLIS3Q8NEA6 775 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 SPATA17Q96L03 361 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 FNBP1Q96RU3 617 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 SMG9Q9H0W8 520 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 CCDC86Q9H6F5 360 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 APOBEC2Q9Y235 224 aaKnown RBP9.35□□□□□ -0.91
SMAD4-215ENST00000592911 STYXL1Q9Y6J8 313 aa9.35□□□□□ -0.91
SMAD4-215ENST00000592911 CELSR3Q9NYQ7 3312 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 NAV2Q8IVL1 2488 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 KPNA7A9QM74 516 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 E9PMD0 336 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 PRPF40AO75400 957 aaKnown RBP9.34□□□□□ -0.91
SMAD4-215ENST00000592911 TADA3O75528 432 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 IL18RAPO95256 599 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 TOP3BO95985 862 aaKnown RBP9.34□□□□□ -0.91
SMAD4-215ENST00000592911 ADH1CP00326 375 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 APODP05090 189 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 U2AF2P26368 475 aaKnown RBP eCLIP9.34□□□□□ -0.912e-6■■□□□ 14.3
SMAD4-215ENST00000592911 PCSK1P29120 753 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 TNFSF9P41273 254 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 GRIA2P42262 883 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 LHX1P48742 406 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 ZNF131P52739 623 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 SLC12A3P55017 1021 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 SLC7A9P82251 487 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 MYL7Q01449 175 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 POSTNQ15063 836 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 ZNF174Q15697 407 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 ME3Q16798 604 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 JADE1Q6IE81 842 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 DTHD1Q6ZMT9 781 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 C4orf50Q6ZRC1 276 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 DPH6Q7L8W6 267 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 LRRTM3Q86VH5 581 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 LAPTM4BQ86VI4 370 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 SPNS2Q8IVW8 549 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 LRRC52Q8N7C0 313 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 FBXO18Q8NFZ0 1043 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 RIN3Q8TB24 985 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 GIPC2Q8TF65 315 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 HVCN1Q96D96 273 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 C8orf76Q96K31 380 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 PNKPQ96T60 521 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 PYM1Q9BRP8 204 aaKnown RBP9.34□□□□□ -0.91
SMAD4-215ENST00000592911 MSTO1Q9BUK6 570 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 TPSD1Q9BZJ3 242 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 HAPLN2Q9GZV7 340 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 ST6GALNAC4Q9H4F1 302 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 CACNA2D2Q9NY47 1150 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 TBC1D14Q9P2M4 693 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 PTPRQQ9UMZ3 2332 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 MAST4O15021 2626 aa9.34□□□□□ -0.91
SMAD4-215ENST00000592911 SPTA1P02549 2419 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms