RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TSTA3Q13630 321 aaPredicted RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 VCPIP1Q96JH7 1222 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 BTBD6Q96KE9 485 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 PRPF18Q99633 342 aaKnown RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 TRIM9Q9C026 710 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 CEP44Q9C0F1 390 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 PRMT7Q9NVM4 692 aaPredicted RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 CLUHO75153 1309 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 TIMM44O43615 452 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 RGS4P49798 205 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 TPI1P60174 286 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 HERVK_113P62684 666 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 DYNLT1P63172 113 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 SLC7A5Q01650 507 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 PCBP1Q15365 356 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF484Q5JVG2 852 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 NT5DC1Q5TFE4 455 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 TMEM270Q6UE05 265 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 TRMT11Q7Z4G4 463 aaKnown RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 RABEPKQ7Z6M1 372 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 SMYD4Q8IYR2 804 aaPredicted RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 GRAMD1CQ8IYS0 662 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 SLC4A9Q96Q91 983 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 OLFM1Q99784 485 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 ERP44Q9BS26 406 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 CYP3A43Q9HB55 503 aa8.12□□□□□ -1.11
VPS13D-211ENST00000543710 ZCCHC17Q9NP64 241 aaKnown RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 XPO7Q9UIA9 1087 aaKnown RBP8.12□□□□□ -1.11
VPS13D-211ENST00000543710 CNTNAP5Q8WYK1 1306 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 HBP1O60381 514 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 PRKCBP05771 671 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 MTHFRP42898 656 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 MTFR1Q15390 333 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 CNGA3Q16281 694 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 FKBP9P1Q75LS8 142 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 LUZP2Q86TE4 346 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 DNAJC9Q8WXX5 260 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 GOLPH3Q9H4A6 298 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 JPH1Q9HDC5 661 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 HDAC6Q9UBN7 1215 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 GTF3C4Q9UKN8 822 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 TTC7AQ9ULT0 858 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.11□□□□□ -1.112e-6■■■■■ 55.4
VPS13D-211ENST00000543710 GDAQ9Y2T3 454 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 RBM47A0AV96 593 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ADCYAP1R1P41586 468 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SLC26A2P50443 739 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 FSCN1Q16658 493 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 FKBP1CQ5VVH2 108 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ANKRD40Q6AI12 368 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF34Q8IZ26 560 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ATPAF2Q8N5M1 289 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 TEKT4Q8WW24 435 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 USP6NLQ92738 828 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ETNK1Q9HBU6 452 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 GIMAP4Q9NUV9 329 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SYBUQ9NX95 663 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SRRDQ9UH36 339 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 DNPEPQ9ULA0 475 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ACTL7BQ9Y614 415 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 RPSAP08865 295 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 RENBPP51606 427 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 BACE1P56817 501 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 IRX5P78411 483 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF543Q08ER8 600 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 CSTF3Q12996 717 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 MKRN4PQ13434 485 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 HP1BP3Q5SSJ5 553 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 C11orf74Q86VG3 221 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 IGDCC4Q8TDY8 1250 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 AHCYL2Q96HN2 611 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ANLNQ9NQW6 1124 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SAR1AQ9NR31 198 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ARHGEF38Q9NXL2 777 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ADAMTS1Q9UHI8 967 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF839A8K0R7 811 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 DAB1O75553 588 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 KCNK10P57789 538 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 PPP4CP60510 307 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 EPS8Q12929 822 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 PTK2BQ14289 1009 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 UBXN2BQ14CS0 331 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 KLHDC7AQ5VTJ3 777 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 JAMLQ86YT9 394 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SVOPQ8N4V2 548 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 ZNF398Q8TD17 642 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 DLG3Q92796 817 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 CELF1Q92879 486 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 FAM149B1Q96BN6 582 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 C18orf8Q96DM3 657 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 SLC39A8Q9C0K1 460 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 TAGLN3Q9UI15 199 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 PRR12Q9ULL5 1215 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 PCDHGB4Q9UN71 923 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 EIF3LQ9Y262 564 aaKnown RBP8.11□□□□□ -1.11
VPS13D-211ENST00000543710 NEU2Q9Y3R4 380 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 MST1RQ04912 1400 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 TNS2Q63HR2 1409 aa8.11□□□□□ -1.11
VPS13D-211ENST00000543710 A0A087X1B8 175 aa8.1□□□□□ -1.11
VPS13D-211ENST00000543710 EEF2KO00418 725 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms