RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FAM160A1Q05DH4 1040 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 TNK2Q07912 1038 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 ADAM9Q13443 819 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 COBLL1Q53SF7 1204 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 WDR44Q5JSH3 913 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 SPATA20Q8TB22 786 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 GSDMAQ96QA5 445 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 CYP2S1Q96SQ9 504 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 ZNF518BQ9C0D4 1074 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 R4GN57 208 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 CFAP54Q96N23 3096 aa20.65■□□□□ 0.9
USP40-207ENST00000450940 TRAV19A0A0A6YYK7 116 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 P4HA1P13674 534 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 PSMC2P35998 433 aaKnown RBP20.64■□□□□ 0.89
USP40-207ENST00000450940 PPP3CCP48454 512 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 CACNA2D1P54289 1103 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 PNOCQ13519 176 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 PAQR9Q6ZVX9 377 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 FAM186BQ8IYM0 893 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 CRYBG2Q8N1P7 616 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 TNIP3Q96KP6 325 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 TIGD1Q96MW7 591 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 HPS4Q9NQG7 708 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 RMND1Q9NWS8 449 aa20.64■□□□□ 0.89
USP40-207ENST00000450940 C2orf78A6NCI8 922 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 GOLGA6L4A6NEF3 574 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 HLA-DRAP01903 254 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 TDGF1P13385 188 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 RAP1GAPP47736 663 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 CSTF1Q05048 431 aaKnown RBP20.63■□□□□ 0.89
USP40-207ENST00000450940 PPP3CAQ08209 521 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 USP4Q13107 963 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 RUNX3Q13761 415 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 LRRC32Q14392 662 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 PDGFRLQ15198 375 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 ZNF77Q15935 545 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 DGKKQ5KSL6 1271 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 UNC93AQ86WB7 457 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 ZBTB44Q8NCP5 570 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 ELMO3Q96BJ8 720 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 FAM126AQ9BYI3 521 aaPredicted RBP20.63■□□□□ 0.89
USP40-207ENST00000450940 TRPC7Q9HCX4 862 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 TRPM5Q9NZQ8 1165 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 PCDHGA2Q9Y5H1 932 aa20.63■□□□□ 0.89
USP40-207ENST00000450940 ZNF840PA6NDX5 716 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 OTOL1A6NHN0 477 aaPredicted RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 CLDN5O00501 218 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 LMNAP02545 664 aaKnown RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 KRT13P13646 458 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 HDCP19113 662 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 GTF2H1P32780 548 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 ASPAP45381 313 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 PDE6CP51160 858 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 GAS6Q14393 721 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 ZNF658Q5TYW1 1059 aaPredicted RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 SCARA5Q6ZMJ2 495 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 ELOA2Q8IYF1 753 aaPredicted RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 SMYD4Q8IYR2 804 aaPredicted RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 ARL14EPQ8N8R7 260 aaPredicted RBP20.62■□□□□ 0.89
USP40-207ENST00000450940 TTC8Q8TAM2 541 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 CHFRQ96EP1 664 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 ZSCAN32Q9NX65 697 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 IL37Q9NZH6 218 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 ARHGAP26Q9UNA1 814 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 GVINP1Q7Z2Y8 2422 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 FRYLO94915 3013 aa20.62■□□□□ 0.89
USP40-207ENST00000450940 MYH10P35580 1976 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 ATP8B3O60423 1300 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 TNFRSF10BO14763 440 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 LILRB5O75023 590 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 OLFM2O95897 454 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 CKMP06732 381 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 TRIM49P0CI25 452 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 TRIM49CP0CI26 452 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 PIK3CAP42336 1068 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 PRCPP42785 496 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 GCLMP48507 274 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 CCINQ13939 588 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 MTF1Q14872 753 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 SPOPLQ6IQ16 392 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 CC2D1AQ6P1N0 951 aaPredicted RBP20.61■□□□□ 0.89
USP40-207ENST00000450940 FAM35AQ86V20 835 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 FUKQ8N0W3 1084 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 NUP93Q8N1F7 819 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 SYNPOQ8N3V7 929 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 SPEM1Q8N4L4 309 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 KIAA1958Q8N8K9 716 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 TAS1R2Q8TE23 839 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 GTPBP4Q9BZE4 634 aaKnown RBP20.61■□□□□ 0.89
USP40-207ENST00000450940 EBF3Q9H4W6 596 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 PCDHA5Q9Y5H7 936 aa20.61■□□□□ 0.89
USP40-207ENST00000450940 OTOGLQ3ZCN5 2332 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 TRDMT1O14717 391 aaKnown RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 RTN3O95197 1032 aaPredicted RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 PAPSS2O95340 614 aaPredicted RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 SMC2O95347 1197 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 CCR3P51677 355 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 NDST1P52848 882 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 SLC7A9P82251 487 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 INCA1Q0VD86 236 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 244.6 ms