RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CFAP221Q4G0U5 840 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GDF6Q6KF10 455 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 PRRT2Q7Z6L0 340 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 RNF135Q8IUD6 432 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF576Q9H609 170 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 LIMA1Q9UHB6 759 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 GIT1Q9Y2X7 761 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 WDR19Q8NEZ3 1342 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CCDC189A1A4V9 331 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 EIF2S1P05198 315 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CHRM3P20309 590 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 ITGALP20701 1170 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CASP14P31944 242 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC9A5Q14940 896 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 DLK2Q6UY11 383 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 ATG9AQ7Z3C6 839 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 FAM129CQ86XR2 697 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 IP6K2Q9UHH9 426 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 MID2Q9UJV3 735 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 CDY1Q9Y6F8 540 aa9.6□□□□□ -0.87
LIMCH1-202ENST00000381753 LRRC14BA6NHZ5 514 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 C5orf58C9J3I9 102 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 LRRC63Q05C16 580 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SNRNP35Q16560 246 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 AMZ1Q400G9 498 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 DENND5BQ6ZUT9 1274 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CCDC33Q8N5R6 958 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 JADE3Q92613 823 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 RBM41Q96IZ5 413 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ARHGEF4Q9NR80 690 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CYP39A1Q9NYL5 469 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 NRBP1Q9UHY1 535 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 PADI3Q9ULW8 664 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CCDC195A0A1B0GUA6 201 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ENO2P09104 434 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ESRRAP11474 423 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 UBA1P22314 1058 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 GPR1P46091 355 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SIM2Q14190 667 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ZSCAN23Q3MJ62 389 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF658Q5TYW1 1059 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ANO7Q6IWH7 933 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 PPTC7Q8NI37 304 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ADGRE3Q9BY15 652 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 PKD2L2Q9NZM6 624 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 GABRQQ9UN88 632 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CROCC2H7BZ55 1655 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CSTF2P33240 577 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CLK3P49761 638 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 NCKAP1LP55160 1127 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 FANCCQ00597 558 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TAP1Q03518 808 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ANKLE1Q8NAG6 615 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CLIP3Q96DZ5 547 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 NIF3L1Q9GZT8 377 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 C17orf75Q9HAS0 396 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 PDGFCQ9NRA1 345 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ATP6V1HQ9UI12 483 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ASTN2O75129 1339 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TBL1XO60907 577 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 BDNFP23560 247 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 HOXC12P31275 282 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 BLKP51451 505 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 MAPK10P53779 464 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 PDE12Q6L8Q7 609 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF852Q6ZMS4 543 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TTC13Q8NBP0 860 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 MYLIPQ8WY64 445 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 RUNDC3BQ96NL0 473 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC38A3Q99624 504 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 ZCCHC17Q9NP64 241 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SIRPGQ9P1W8 387 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 C9J4A7 227 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 CES2O00748 559 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 HS6ST1O60243 411 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 RECQL4O94761 1208 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SMARCA1P28370 1054 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 MNAT1P51948 309 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 BCL2L1Q07817 233 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TRAPPC5Q8IUR0 188 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TMEM192Q8IY95 271 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 LZTR1Q8N653 840 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 AGAP3Q96P47 875 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 DPEP2Q9H4A9 486 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 LIMD1Q9UGP4 676 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 TRAF3IP3Q9Y228 551 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC45A1Q9Y2W3 748 aa9.59□□□□□ -0.87
LIMCH1-202ENST00000381753 SPHKAPQ2M3C7 1700 aa9.59□□□□□ -0.88
LIMCH1-202ENST00000381753 A0A088AWK7 358 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 OR6C75A6NL08 312 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 ARP10275 920 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 ZNF10P21506 573 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 SMAD3P84022 425 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 GAD2Q05329 585 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 PTPN11Q06124 597 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 SLC39A5Q6ZMH5 540 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 CYFIP2Q96F07 1278 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 CBX8Q9HC52 389 aa9.58□□□□□ -0.88
LIMCH1-202ENST00000381753 ZSWIM6Q9HCJ5 1215 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms