RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NLGN1Q8N2Q7 840 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SAMD3Q8N6K7 520 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SPATA18Q8TC71 538 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ATPIF1Q9UII2 106 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 AGO2Q9UKV8 859 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 IRAK3Q9Y616 596 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SFI1A8K8P3 1242 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ATG7O95352 703 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CD4P01730 458 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 TCF4P15884 667 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 IL5RAQ01344 420 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SCUBE1Q8IWY4 988 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 RAD54LQ92698 747 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 MYL4P12829 197 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SMAD1Q15797 465 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 POLR3FQ9H1D9 316 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 DCLRE1BQ9H816 532 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 PSMB9P28065 219 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 MAD2L1Q13257 205 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 USP17L2Q6R6M4 530 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SPATA4Q8NEY3 305 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 C1QTNF1Q9BXJ1 281 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC59Q9P031 241 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ANXA6P08133 673 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ERFP50548 548 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ATP6AP1LQ52LC2 224 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 BNC2Q6ZN30 1099 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 RIN2Q8WYP3 895 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 SENP2Q9HC62 589 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 SYNPO2Q9UMS6 1093 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 F8VZ95 297 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 LSP1P33241 339 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 FDFT1P37268 417 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 C21orf59P57076 290 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 DGKDQ16760 1214 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 TRPC4APQ8TEL6 797 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF512Q96ME7 567 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 RSAD1Q9HA92 442 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 OR6A2O95222 327 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 PCCAP05165 728 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 DSG3P32926 999 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ITIH4Q14624 930 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF846Q147U1 533 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 NOL6Q9H6R4 1146 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 GDF11O95390 407 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 TKTP29401 623 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 GEMIN4P57678 1058 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 IL2P60568 153 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 COASYQ13057 564 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ITGADQ13349 1161 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 ATP1A4Q13733 1029 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 OASLQ15646 514 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 UBE2SQ16763 222 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 MARK2Q7KZI7 788 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 UTP15Q8TED0 518 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 KATNAL1Q9BW62 490 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 MARK1Q9P0L2 795 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 USP17L3A6NCW0 530 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 USP17L4A6NCW7 530 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC2A3P11169 496 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 GRIK3Q13003 919 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 USP17L1Q7RTZ2 530 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 NSUN6Q8TEA1 469 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 AP3S1Q92572 193 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 AMACRQ9UHK6 382 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 SNX13Q9Y5W8 968 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 NSUN7Q8NE18 718 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM172AQ8WUF8 416 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 AKAP7Q9P0M2 348 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 DNMBPQ6XZF7 1577 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 SH2B2O14492 632 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 BBOX1O75936 387 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 HIST1H2ABP04908 130 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 WEE2P0C1S8 567 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 RUNDC3AQ59EK9 446 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 HIST3H2AQ7L7L0 130 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 UCMAQ8WVF2 138 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 HIST1H2ACQ93077 130 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 TRAPPC9Q96Q05 1148 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 LBHD1Q9BQE6 289 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 PCDHA6Q9UN73 950 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 PCDHA8Q9Y5H6 950 aa14.4□□□□□ -0.1
CCDC88A-201ENST00000263630 IGF2BP3O00425 579 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 DHX40Q8IX18 779 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TFB1MQ8WVM0 346 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 AGPAT1Q99943 283 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 INTS2Q9H0H0 1204 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 FKBP6O75344 327 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 FASP25445 335 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 BNC1Q01954 994 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 DENND1BQ6P3S1 775 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TRAPPC11Q7Z392 1133 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 ABI2Q9NYB9 513 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 RPS6KA5O75582 802 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 TNFAIP8O95379 198 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 LONRF1Q17RB8 773 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 SEL1L3Q68CR1 1132 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 CAB39LQ9H9S4 337 aa14.39□□□□□ -0.11
CCDC88A-201ENST00000263630 GPR108Q9NPR9 543 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms