RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PRMT3O60678 531 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ZC3H11AO75152 810 aaKnown RBP eCLIP10.89□□□□□ -0.672e-8■■■■□ 25.1
LIG1-220ENST00000601091 SPAG7O75391 227 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 MAGEA4P43358 317 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ERFP50548 548 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ACAP1Q15027 740 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 PCNX4Q63HM2 1172 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 KAT5Q92993 513 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 TMEM143Q96AN5 459 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 DDX56Q9NY93 547 aaKnown RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 HTR3EA5X5Y0 456 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 FAM47DPA6NHR8 397 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 KRT7P08729 469 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 JAM2P57087 298 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 NFX1Q12986 1120 aaKnown RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 NFIL3Q16649 462 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 DUOXA2Q1HG44 320 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 WLSQ5T9L3 541 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 AADACL2Q6P093 401 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 SLC2A7Q6PXP3 512 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 EEPD1Q7L9B9 569 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 PRELID2Q8N945 189 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 SH3TC2Q8TF17 1288 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ALG3Q92685 438 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ATP2A3Q93084 1043 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 DACT3Q96B18 629 aaPredicted RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 TUBB6Q9BUF5 446 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 XPO7Q9UIA9 1087 aaKnown RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 CORO1CQ9ULV4 474 aaPredicted RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 ASAP2O43150 1006 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 KLHL41O60662 606 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 TRPA1O75762 1119 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 LUC7L3O95232 432 aaKnown RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 TTC4O95801 387 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 GARTP22102 1010 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 S100A5P33763 92 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 HSPA1LP34931 641 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 AP3M2P53677 418 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 TAP1Q03518 808 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 NCOA4Q13772 614 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 SEPT6Q14141 434 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 CCDC14Q49A88 953 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ZNF667Q5HYK9 610 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 NIPA1Q7RTP0 329 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 SLFN11Q7Z7L1 901 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 SYTL5Q8TDW5 730 aaPredicted RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 WDR60Q8WVS4 1066 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 TRABDQ9H4I3 376 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 ACAD9Q9H845 621 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 MRPL40Q9NQ50 206 aaKnown RBP10.89□□□□□ -0.67
LIG1-220ENST00000601091 KLHL11Q9NVR0 708 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 HESX1Q9UBX0 185 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 PCYOX1Q9UHG3 505 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 TIMM22Q9Y584 194 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 CSADQ9Y600 493 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 MAD1L1Q9Y6D9 718 aa10.89□□□□□ -0.67
LIG1-220ENST00000601091 IQANK1A0A1B0GTG1 560 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 TSPAN1O60635 241 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 ATP4AP20648 1035 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 YARSP54577 528 aaKnown RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 PRKCEQ02156 737 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 ZNF699Q32M78 642 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 C2CD6Q53TS8 623 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 SCYL3Q8IZE3 742 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 GOT1L1Q8NHS2 421 aaPredicted RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 STAMBPL1Q96FJ0 436 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 WRNIP1Q96S55 665 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 MRPL46Q9H2W6 279 aaKnown RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 MYH15Q9Y2K3 1946 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 NUDT17P0C025 328 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 CYP24A1Q07973 514 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 KLHL38Q2WGJ6 581 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 ANKRD20A8PQ5CZ79 823 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 FEZF2Q8TBJ5 459 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 TBC1D20Q96BZ9 403 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 ADPGKQ9BRR6 497 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 OSBPL7Q9BZF2 842 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 DNAJC18Q9H819 358 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 TOPORSQ9NS56 1045 aaPredicted RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 FKBP14Q9NWM8 211 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 SMG5Q9UPR3 1016 aaKnown RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 FOXO6A8MYZ6 492 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 SHBGP04278 402 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 NOP14P78316 857 aaKnown RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 HIF1AQ16665 826 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 CLEC16AQ2KHT3 1053 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 C15orf59Q2T9L4 293 aaPredicted RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 ERMARDQ5T6L9 678 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 RASIP1Q5U651 963 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 FAM71AQ8IYT1 594 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 GPRASP2Q96D09 838 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 PSKH2Q96QS6 385 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 NDNQ99608 321 aa10.88□□□□□ -0.67
LIG1-220ENST00000601091 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 RPF1Q9H9Y2 349 aaKnown RBP10.88□□□□□ -0.67
LIG1-220ENST00000601091 CES1P23141 567 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 OLFML2BQ68BL8 750 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 RSPH3Q86UC2 560 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 AMIGO3Q86WK7 504 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 FUKQ8N0W3 1084 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms