RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 LRRC8DQ7L1W4 858 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 PAWRQ96IZ0 340 aaKnown RBP17.74■□□□□ 0.43
LDLR-206ENST00000557958 ADAM2Q99965 735 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 SEZ6LQ9BYH1 1024 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 FAM105AQ9NUU6 356 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 CYTH4Q9UIA0 394 aa17.74■□□□□ 0.43
LDLR-206ENST00000557958 OPA1O60313 960 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 CAND2O75155 1236 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 ERBB2P04626 1255 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 KRT7P08729 469 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 FAM163BP0C2L3 166 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 SELPP16109 830 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 LRPAP1P30533 357 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 MTMR3Q13615 1198 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 SIX1Q15475 284 aaPredicted RBP17.73■□□□□ 0.43
LDLR-206ENST00000557958 SOWAHAQ2M3V2 549 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 DUPD1Q68J44 220 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 ACOT1Q86TX2 421 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 SLCO2A1Q92959 643 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 LPPQ93052 612 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 MCRS1Q96EZ8 462 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 TNIP3Q96KP6 325 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 TRIM51Q9BSJ1 452 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 OSBPL8Q9BZF1 889 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 PPP1R12CQ9BZL4 782 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 MGEA5O60502 916 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 GAS8O95995 478 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 KRT1P04264 644 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 TLE2Q04725 743 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 ZNF252P-AS1Q0IIN9 211 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 MBTPS1Q14703 1052 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 ARHGAP17Q68EM7 881 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 TOP6BLQ8N6T0 577 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 DPH5Q9H2P9 285 aa17.73■□□□□ 0.43
LDLR-206ENST00000557958 METTL5Q9NRN9 209 aaKnown RBP17.73■□□□□ 0.43
LDLR-206ENST00000557958 F8VP50 259 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 RNF8O76064 485 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 RALAP11233 206 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 RFC1P35251 1148 aaPredicted RBP17.72■□□□□ 0.43
LDLR-206ENST00000557958 GNL1P36915 607 aaPredicted RBP17.72■□□□□ 0.43
LDLR-206ENST00000557958 HSPA9P38646 679 aaKnown RBP17.72■□□□□ 0.43
LDLR-206ENST00000557958 CCL23P55773 120 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 CFAP58Q5T655 872 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 FAM102AQ5T9C2 384 aaPredicted RBP17.72■□□□□ 0.43
LDLR-206ENST00000557958 TRAF7Q6Q0C0 670 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 ZDHHC17Q8IUH5 632 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 UBA3Q8TBC4 463 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 STK32AQ8WU08 396 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 ASNSD1Q9NWL6 643 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 GIT1Q9Y2X7 761 aa17.72■□□□□ 0.43
LDLR-206ENST00000557958 PDCD11Q14690 1871 aaKnown RBP17.72■□□□□ 0.43
LDLR-206ENST00000557958 TCRBV7S2A1N4TA0A589 114 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 MEIS3P2A8K0S8 358 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 H3BQF6 201 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 TJP3O95049 919 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 FAM153BP0C7A2 387 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 PTPN7P35236 360 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 PTGIRP43119 386 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 LMNB2Q03252 620 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 PPP1R7Q15435 360 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 FAM153CQ494X1 144 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 PPP1R26Q5T8A7 1209 aaPredicted RBP17.71■□□□□ 0.43
LDLR-206ENST00000557958 DAB2IPQ5VWQ8 1189 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 CRYBG2Q8N1P7 616 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 SCLYQ96I15 445 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 PPP1R10Q96QC0 940 aaKnown RBP17.71■□□□□ 0.43
LDLR-206ENST00000557958 FMO2Q99518 471 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 TRIM31Q9BZY9 425 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 C11orf49Q9H6J7 331 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 FAM153AQ9UHL3 310 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 POLR3GO15318 223 aaPredicted RBP17.71■□□□□ 0.43
LDLR-206ENST00000557958 THP07101 528 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 ECHS1P30084 290 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 BCAT1P54687 386 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 LILRA4P59901 499 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 OGDHQ02218 1023 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 FAAP100Q0VG06 881 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 KLF1Q13351 362 aaPredicted RBP17.71■□□□□ 0.43
LDLR-206ENST00000557958 TRADDQ15628 312 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 CCNG2Q16589 344 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 OR6B2Q6IFH4 312 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 TTC27Q6P3X3 843 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 DDX42Q86XP3 938 aaKnown RBP eCLIP17.71■□□□□ 0.431e-7■■■□□ 15
LDLR-206ENST00000557958 ADGRF2Q8IZF7 708 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 ZDHHC14Q8IZN3 488 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 C12orf29Q8N999 325 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 SLITRK1Q96PX8 696 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 MCOLN1Q9GZU1 580 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 HIPK3Q9H422 1215 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 FAM49BQ9NUQ9 324 aa17.71■□□□□ 0.43
LDLR-206ENST00000557958 MTRF1LQ9UGC7 380 aaKnown RBP17.71■□□□□ 0.43
LDLR-206ENST00000557958 PTGESO14684 152 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 SKIP12755 728 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 GGCXP38435 758 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 SLC8A3P57103 927 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 SOX4Q06945 474 aaPredicted RBP17.7■□□□□ 0.42
LDLR-206ENST00000557958 BST2Q10589 180 aaKnown RBP17.7■□□□□ 0.42
LDLR-206ENST00000557958 LIMS2Q7Z4I7 341 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 ZFP42Q96MM3 310 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 NCAPGQ9BPX3 1015 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms