RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	FAM212A	Q96EL1	285 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	LLPH	Q9BRT6	129 aa	Known RBP	13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	PI4K2A	Q9BTU6	479 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	MMTAG2	Q9BU76	263 aa	Known RBP	13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	TRPC7	Q9HCX4	862 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	ARHGAP26	Q9UNA1	814 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	GPSM3	Q9Y4H4	160 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	ZNF638	Q14966	1978 aa	Known RBP	13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	ANK1	P16157	1881 aa		13.37	□□□□□ -0.27
CAPN1-223	ENST00000533079	THADA	Q6YHU6	1953 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079		K7ENM7	598 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	MAP3K13	O43283	966 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	AP5Z1	O43299	807 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	CAPNS1	P04632	268 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	OPRD1	P41143	372 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	SEC13	P55735	322 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	HMGN5	P82970	282 aa	Known RBP	13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	NBR1	Q14596	966 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	DUOXA1	Q1HG43	343 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	C2orf27A	Q580R0	203 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	EOGT	Q5NDL2	527 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	RAB44	Q7Z6P3	723 aa	Predicted RBP	13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	SH3RF2	Q8TEC5	729 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	CDK5RAP3	Q96JB5	506 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	CEP295NL	Q96MC4	621 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	FNBP1	Q96RU3	617 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	ACBD6	Q9BR61	282 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	DPP3	Q9NY33	737 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	GCNT4	Q9P109	453 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	PILRB	Q9UKJ0	227 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC6A14	Q9UN76	642 aa		13.36	□□□□□ -0.27
CAPN1-223	ENST00000533079	PTPRD	P23468	1912 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SPAAR	A0A1B0GVQ0	90 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	MYMK	A6NI61	221 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC26A4	O43511	780 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	OPHN1	O60890	802 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SERPINF2	P08697	491 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	PLA2G4B	P0C869	781 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	PTGER3	P43115	390 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	GPR15	P49685	360 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	ZNF131	P52739	623 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	MYL7	Q01449	175 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	GFPT1	Q06210	699 aa	Predicted RBP	13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	ST3GAL1	Q11201	340 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC14A1	Q13336	389 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	INTS6L	Q5JSJ4	861 aa	Known RBP	13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLFN12L	Q6IEE8	588 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC36A4	Q6YBV0	504 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	TMEM86A	Q8N2M4	240 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	PARVG	Q9HBI0	331 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	TMEM74B	Q9NUR3	256 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	PCDHB6	Q9Y5E3	794 aa		13.35	□□□□□ -0.27
CAPN1-223	ENST00000533079	PCDH15	Q96QU1	1955 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079		K7ELQ4	463 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC9A3R1	O14745	358 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	IL18RAP	O95256	599 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	CFI	P05156	583 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	MAP7D1	Q3KQU3	841 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC39A4	Q6P5W5	647 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	TMEM92	Q6UXU6	159 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	PDZD3	Q86UT5	571 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	TTC30A	Q86WT1	665 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	TMEFF1	Q8IYR6	380 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	CCDC33	Q8N5R6	958 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	ALLC	Q8N6M5	410 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	ARL14EP	Q8N8R7	260 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	IL17RC	Q8NAC3	791 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	STKLD1	Q8NE28	680 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	TTC16	Q8NEE8	873 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	SLC22A12	Q96S37	553 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	REEP2	Q9BRK0	252 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	CAPN10	Q9HC96	672 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	TMLHE	Q9NVH6	421 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	DNAAF2	Q9NVR5	837 aa	Known RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	DDX43	Q9NXZ2	648 aa	Known RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	EHD2	Q9NZN4	543 aa		13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	ATXN2	Q99700	1313 aa	Known RBP	13.34	□□□□□ -0.27
CAPN1-223	ENST00000533079	ADAMTS20	P59510	1910 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	TRAK2	O60296	914 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	HUS1	O60921	280 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	APOD	P05090	189 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CYP17A1	P05093	508 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	SYP	P08247	313 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CHRM1	P11229	460 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	HDC	P19113	662 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CYP2F1	P24903	491 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PCSK1	P29120	753 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	MAGEA11	P43364	429 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	ACOT2	P49753	483 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	TOB1	P50616	345 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CDR1	P51861	262 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	NEK4	P51957	841 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	GTF2B	Q00403	316 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZRSR1	Q15695	479 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	IL17A	Q16552	155 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	DDR2	Q16832	855 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms